| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_10267-4.23 | INTEGRIN BETA SUBUNIT | Bpl_scaf_10267 | 446238 | 469856 | - |
| CDS | |||||
| Bpl_scaf_10267-4.23 | |||||
| Transcript |
| Bpl_scaf_10267-4.23 |
| Protein |
| Bpl_scaf_10267-4.23 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00362 | Integrin_beta | Integrin beta chain VWA domain | Domain | Interproscan |
| PF07965 | Integrin_B_tail | Integrin beta tail domain | Domain | Interproscan |
| PF08725 | Integrin_b_cyt | Integrin beta cytoplasmic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002369 | Domain | Integrin beta subunit, VWA domain | Interproscan |
| IPR012896 | Domain | Integrin beta subunit, tail | Interproscan |
| IPR014836 | Domain | Integrin beta subunit, cytoplasmic domain | Interproscan |
| IPR015812 | Family | Integrin beta subunit | Interproscan |
| IPR036349 | Homologous_superfamily | Integrin beta tail domain superfamily | Interproscan |
| IPR036465 | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10082 | INTEGRIN BETA SUBUNIT | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005178 | Molecular Function | integrin binding | Interproscan |
| GO:0005925 | Cellular Component | focal adhesion | Interproscan |
| GO:0007160 | Biological Process | cell-matrix adhesion | Interproscan |
| GO:0007229 | Biological Process | integrin-mediated signaling pathway | Interproscan |
| GO:0008305 | Cellular Component | integrin complex | Interproscan |
| GO:0009986 | Cellular Component | cell surface | Interproscan |
| GO:0016477 | Biological Process | cell migration | Interproscan |
| GO:0033627 | Biological Process | cell adhesion mediated by integrin | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K05719 | ITGB1, CD29; integrin beta 1 | - | Rap1 signaling pathway | ko04015 | PMID: 28812709 |
| PI3K-Akt signaling pathway | ko04151 | PMID: 28812709 | |||
| ECM-receptor interaction | ko04512 | PMID: 28812709 | |||
| Cell adhesion molecules (CAMs) | ko04514 | PMID: 28812709 | |||
| Phagosome | ko04145 | PMID: 28812709 | |||
| Focal adhesion | ko04510 | PMID: 28812709 | |||
| Tight junction | ko04530 | PMID: 28812709 | |||
| Regulation of actin cytoskeleton | ko04810 | PMID: 28812709 | |||
| Platelet activation | ko04611 | PMID: 28812709 | |||
| Leukocyte transendothelial migration | ko04670 | PMID: 28812709 | |||
| Axon guidance | ko04360 | PMID: 28812709 | |||
| Pathways in cancer | ko05200 | PMID: 28812709 | |||
| Proteoglycans in cancer | ko05205 | PMID: 28812709 | |||
| Small cell lung cancer | ko05222 | PMID: 28812709 | |||
| Hypertrophic cardiomyopathy (HCM) | ko05410 | PMID: 28812709 | |||
| Arrhythmogenic right ventricular cardiomyopathy (ARVC) | ko05412 | PMID: 28812709 | |||
| Dilated cardiomyopathy (DCM) | ko05414 | PMID: 28812709 | |||
| Pathogenic Escherichia coli infection | ko05130 | PMID: 28812709 | |||
| Shigellosis | ko05131 | PMID: 28812709 | |||
| Pertussis | ko05133 | PMID: 28812709 | |||
| Bacterial invasion of epithelial cells | ko05100 | PMID: 28812709 | |||
| Human papillomavirus infection | ko05165 | PMID: 28812709 | |||
| Toxoplasmosis | ko05145 | PMID: 28812709 | |||
| Leishmaniasis | ko05140 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_10267-4.23 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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