Gene detail

Detailed information of Bpl_scaf_10139-3.23 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10139-3.23	HYALURONIC ACID-BINDING PROTEIN 4	Bpl_scaf_10139	288137	312712	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_10139-3.23

GTATTTTACATGTTTACCTCTTTTAAGCTCGTCACTTTTGGGCATTTCCTAGTAAGCTACAAATTTTCATGATTAAAATCTTTAATAAGCTGGAAAAAATAATTCAATGCAGTTACTAACGCATTATTGATACTCCCGCCAAAATTTCTATATATGGAACTGGAAAAAGACCTTGATTTTTCGGAACTCTCGGGTTTCTACTCGAAATCAACGAATAAAACTATCATCCGAACTCCTCCATTCCAAGGCATGCTCGTACTGTCGAGAGAGAAACACGCCATTTTGCTGAGCTTAAAAAAGTAAGGCCGTACAAATCCATTGCCATCCTCTAAAGTGAGAGGAACAATGGACTCCCAATACGGCATAGCAGTTACAAATAAGTTTTGTCTTTTTGATGACGACGATGATGTCGACCCATATGAAATTCTGAAGCAAGAGGAACAGAAGAGAAATGAAGCTTTAGCCAAGGAGAAAGCTGACAAGTCGAAGACAACCAAAAAGACAAAAAAATCCGCTCCACAGACTGATAACAAGAGTAAAACGATAGAGCAAAATACACAAAAGAAAGAAGAAAAAATAAATCAGTCGCAAGCAAGGACACAACAAAGTGAAAGGCCTCCTCGAAGTGCAAGACAAAATATTAACAGAGAACCACGAGAAGACAGACGGCCACGAAGACAAGATGAAAATACATCATCAAATGAACCAAGAGATAAACCAGAGGGAGGATTTGGTGGACGTATGGAACCGAGAGGTGGTTTTTCAGGCCGGCCGCGAGGACGTGGTGGTCCCAGAGGAAGAGGGACTAGAGGAGGTGGTTTCGGTGGTGGATTTGGTGGAAAGCGGGAATTTGAAAGACATAGTGGCAGTGATAGAACCAGTGGTGTGAAGCCTACAGAGAAAAGAGAAGGAAGTGGAGCACACAACTGGGGAACCTTTAAAGATGATTTGGATGAAGAAGCAAGCAAAGAAAATGAAGAGCCAAAAGAATGGAACCAAGGAGAAGACACAGAAAACCAAGATCCAAATGAGAGTACAGAATCAACAGAACAGCCAGTCCCAGAAGGTGAAAAGGCACCAAAACAATTGACTCTTGATGAATGGAAAGCAATGGAAGAGAAAAAACGAGTGAAGGCAGACTTCAACTTGCGAAAAGCTAATGAAGGATCTGATCCCGCACAGTTGAAAGGTTCAGCCTACAGGAAACCAGGCAAAGAAAGTGATGATGAGGAGGATGAAGATGACGAATATGAAGAGGAAGAGGAGCACAAGTTGAAGAATCAAGTTCCAATAAGGATTACTTTCAATGATTCTCCGAGAAGAGGAGGCCGAGGGGGTAGAAGGCCACGTGGTGGAAGAGGCCCTAGAGGTACCCCAGGCCGTGGAGATAGGAGAGGGAATCCACGAGATGCTGCTCCAAGATTTGATGATGAAGCAGACTTTCCAAGTCTTGTCAAATCGGCTGCATAGTGCAACATAGAGTTTAGGAGAAATTTTTCCCCATTTAGACACTTTCAAGTGCGTAATGTGACTTCAAGATTTCAGTACAAAATTCTCAATTGGACCTGCATTTCTGAGGATTATAAATAGTGCACCAAAACATTTTTAAAAAGTGCATTATTTTTTTATACTTGCATTGTTTTGAGATGTTTATTGCTTGATTATAACTTGACAAAATATGTTAAGTACTGTGGTTAAATATGATTGTTTATTTGATCATATACTGTGTTATAGTGCTTCTAATTTTAATGATTGTTGCAAAAGTGAAATTATGACTGAAAGAAGATAGCATGTTAGTTTATATGTTTTTACTGGAGATTTTCATGTTCTTGTGAAAAAAATGTAAATTTATACAAACAAAATATTTAAATTTGGTAATATTATAACACATGAGTTTTATACCTGTGTAACACTGTAGGTAGAAATGAAATCATGGTTAGTCATTAGCAGGTCAGAATCATTTATTTACATTGACTTGTCCCTTGCTGTCTTTCAAGTATGTGCAAAGGAACATTTAGCATTTATATTGTCCCCTAAAACTTACCAATTGATCATTCCTTCCTAAAGTCGTAATCTCGACTGAATCTTGTATGACGGATATTTACTTGTAGACCAGTCTTCTTAATTGAAAATGTTGAACATTTCTTGGAAAAGATATTCAAAGAATGTAGTTTGATTTTGATAGCTTAAAGTCATTCCATTACAATATTTAGAATGTGCATGCTTTCACAATTCTTCAGTGGCCTCATCCAATTATAACATGTTATTCATTAAATTTAAAGTATTATATCGTAGATAATGGAACAAAACTATTAATTTTTAAATGTGTATATTACACACAAATATACTGTCTGCAATCATAATGAACTGTGCTAGTTCAAGTATATAATGTTGATAAAATGCAAGTCTTTCCTAAATGAATTGTTATTCCAGAAATTGAAATGTACTTTGTGAAATTTTCTGCTACAAATTGAAATGAAAATGACTCCCAAGTCCTGTTTCTTGCATATGTAATGCTTGTTGCACATTTGAAATAATTGAAGAAGAAATACTGGACAAGTTTATGTTGGGCCGAGAACTATCTTACTTAACTGCCTATAGTAAACATTACCTCCATATGTGAAGAAATATCACCTATTTATATGATCCTGCTGTGTAATATATTATTATCACTTGTATTTAAAAGGGGAAATAAACCTCTTAATTGATGAATCTTGACTTTGATTAATATACCATTTTAACACATAAATGTGCACCAGAATATGATTTGCTCAATCAGAGTGAGGTGTACAACATTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04774	HABP4_PAI-RBP1	Hyaluronan / mRNA binding family	Family	Interproscan
PF16174	IHABP4_N	Intracellular hyaluronan-binding protein 4 N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006861	Domain	Hyaluronan/mRNA-binding protein	Interproscan
IPR032381	Domain	Intracellular hyaluronan-binding protein 4, N-terminal domain	Interproscan
IPR039764	Family	RNA binding protein HABP4/SERBP1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13199	SERBP1; plasminogen activator inhibitor 1 RNA-binding protein	-	Spliceosome	ko03041	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10139-3.23 global RNA-seq network