Gene detail

Detailed information of Bpl_scaf_10139-11.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10139-11.8	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Bpl_scaf_10139	1124416	1151688	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_10139-11.8

TCGAGTTTCCGTTACAGTTTGTTTAACTAAATTATCTAGAGAAGATGTGTGTTTTATAAATTTAAAATTAAGGAACGATTTTATGCAATTAATTATTGGAATTGGATAAATTTTGGTCCAGAATGAATATATTAATATTTCCCGTTATATTGACGTGTATATCATTGACGTATGGTAACAACTGGGTACGAAGACAAAGAAATTCGTTTACTATAAGCAGAATTGATATGATATCAAAATTGTGTTGGGACCCGTATACAAAAAAGTATTTACGACGATATTTTCCAGTTCGACGACTCACGTGCATTCCTGGTTATGAAGGAGAAAATTGTGCAACACAGTGTTTTAGCTGTCAAGGTTATAGAGAATTACAGACAAAAGTCACATATTTAGAAAACAATCGCCCAGTTATTATACCTGACAATAACGGAGGTAGTGGAACAAAAGGTCAAAGGGGAGAAAAAGGAGACAGGGGCGACAGAGGATTCACTGGTCAAAAAGGAAACCAAGGAGTCTTAGGGTTTACCGGATTTAAAGGAGACGCAGGGGGGGAAGGTGACAAAGGAGACACCGGTGACAGGGGACTTAAAGGAGAAAGAGGGTTGAAAGGAGAATCTGGAACTGGAAATAATGATGTTGTAGGACTACCGGGTCAGAAAGGTGAACCTGGTATTACTGGTCCAAGTGGCCCACCAGGTATAACTGGACAGAAAGGAGATGTAGGACAGTCGGGGATAAATGGTTTACCAGGCAAAAAGGGTGAACCTGGAATGAATGGGTTAAATGGATTCCCAGGAACAAACGGTGAGGATGGTTTACCAGGTCCAAGTGGACTGCCAGGATCAGATGGAGAACGTGGATATCCTGGTATTCCGGGGAATCCAGGGTTGAAAGGGTCAACTGGTGGACCCGGATTTGATGGTCCACCTGGTATTTCCGGTGTGCCTGGGGCAAAAGGTGAAACAGGGGAGACAACTACTATCGTGATACCCAATGAAGAGATTACAATTTTAAAGGAAAAAATAAAGGATTTAGAAAATACAGTAACATCTTGTTGTGATAAAGTTAAAGAGCTAAGTATAGTTGTAACTGAGATATTGAAATCTCTGACTACAACAACTACAACTGAGACAGTAACACAGCCATCATATATTACAACAGTAACTTTACCAGTAACTACACCATTAACAGGCTGTGAACCAAGTGAGTTTAAGTGTGTTAGTTCCGACAGATGTATACCTTCAGAATTTAGGTGTGACGGAATTGGTGATTGTGACGATGAAAGTGACGAAATCGGTTGTAAATGCAACCGATTTCAGTTCACTTGTGTGTCAGATCAACGATGTATTCCTTTAGATAAAAAATGCAACAACGATTTTGACTGTAAAGATAGGTCTGATGAAGTTGGATGTGATGAAACAGCTGGATGTCCTGAAGGATTGTTTACATGTGCCAATAGAAATTGCATAAGACAAGCCTTAAAGTGTAATGGAGTGGACGACTGTGGCGATGAAAGCGACGAACTGTTAGATGGATGTGATTTTGATATTGATGGTTCCGGCGACCATGAACTCCGAGGAGACATACCACAACCGTCACGCTAGGCCAGTCTTCACAGCCCGCATTGCACCAAAGAATCTTACTTACTTCCGCCTGCATTATAATGAATTGTTGTTTGAACCAGTTTATATAACCACTTCTAAATAATCTGGATGTACCTTCTACCACCATTCCTTGCCTTTCTGCTTTGTATAATGACCTATTTTGAACATTTACAAGTTGTACATGGTTTGTCAATCCCTTTCTGACCAAAGGTTATAAATGACTGCAATATTACTGAACCAAAATTTTTTGCATAGGATAGAAGACATTATTAGGTTAGCTTATTCCCTATAAATGGTTCCATTATCTATTAAAGCGAACAAAATATAAACTAGCAATTAAATTACTGTATGTCCCAAGTACTTTAGAAATTATTTTTGTTTGTCATGGGCAGATTATTATCAATTTTTTAATGGGCAACAGAAAACATTTAGACTGTTCATTTCGCTAACTTATAGAATTCTACAAACAAATTATGTAGACATAGGATAAGTGTGATGCTAATTTCGACATAATTGTATAAACAAAAAAATAACCGGAAAATTAAGAGTTTATTTGCTATTCATGATATAAAAACAGCTTTCTATCATATTATAATGTAGCATGTGGAAATACCTTTATCGTTTCCTTTAAGGTGAATAAAATGAATTTTCCCATTTTGTTTTGTTACAAAAGGAATTACTTGGGACACACATTAGCCCTTATTTATTGCTTGCTAAGAACTAAATTATTATGCATGACATGGGATGCTAATATATATATATATTATACCACTATATTTTAAAGTGGTCTTGTTTTATATTTTGCTTGGAAAATTGAAAACTATACCTTCGCTTCAGTAGAACTACCCACATAATTCCGATGTTATGTCATTCTTGGAATTCTTTTTGCGTCATAACAATCATTAAATACATTTTAAAACCAGGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR050685	Family	Low-density lipoprotein receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06237	COL4A; collagen, type IV, alpha	-	PI3K-Akt signaling pathway	ko04151	PMID: 28812709
			ECM-receptor interaction	ko04512	PMID: 28812709
			Focal adhesion	ko04510	PMID: 28812709
			Protein digestion and absorption	ko04974	PMID: 28812709
			Pathways in cancer	ko05200	PMID: 28812709
			Small cell lung cancer	ko05222	PMID: 28812709
			AGE-RAGE signaling pathway in diabetic complications	ko04933	PMID: 28812709
			Human papillomavirus infection	ko05165	PMID: 28812709
			Amoebiasis	ko05146	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10139-11.8 global RNA-seq network