Gene detail

Detailed information of Bpl_scaf_10139-10.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_10139-10.15	SERINE/ARGININE-RICH SPLICING FACTOR	Bpl_scaf_10139	982675	1026485	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_10139-10.15

CAGAGCTCTTCAAATAAATATCAAAGAGACCAGTCTATAACTGGAACGCCATTTTCTGCAGGAAAACGTTCCAAACTGAAAACAATAAACATGTCAGACAAAGGCGATAGGATAACCACAAGGGTTATCCAGGTGGCCAATATTGCTCAGAATACATCTAAAGAACAAATGAAAACTTTGTTTTCTTATATTGGACGAATTGATGACCTGAAACTATATCCAACTATCGATTCTCCAGATGGGGCACCTGTTACAAAGATCTGCTATGTCAAGTTTGATGATTCACAAAGTACAGGGGTGGCTTTACATCTTAACAATACTGTCTTTATTGACAAAGCTCTTATTATTGTGCCAGTCATGGATGGTAAAATTCCTGATGAACAGACTGCCTTACAGCTAGCACCATCTGCCATGGCTGGTCTGATGCCTGGTCAACCAACATGGCCAAGCAATGTTATAAGTCAAATGACGGGAGTTGGAGCCAATCAAGTGATAACAACACATGATCCACGACTAACAGCTCTTGGTTTACCACAGTACCCAGCTCTACCTGGTAATACAGATGGATCAAAGATTGAAGAAATACGTAGAACTGTCTATGTCACAAATCTAGATCCCTCGACTACAACAGAACAGTTGATGAATTTCTTCTTGCAAGTTGGAGAAGTTAAGTATGTACGGATGGCAGGAGATCCTAATGGACCTGTTGTATCAGGATATGTGGAATTCACAGATCAAAGATCTGTAGCTACTGCTCTTACATACAATGGAGTCATGCTTCAAGGAAAACCTGTTGCTGTGACTCACTCAAACACATGTATCGTTAAACCTTTAACAAAGTCTCAGGAGGCTCAGCAAAGGGAAATAGAAGAGGCTATGAAGAAGGTTAAAGAAGCACAGACACTGATATCTGCTGCTGTTGATGATCCTTATGAAAGATCACGTAGTAGATCCTGGTCACGATCTAGACGAGGATCAAGATCAAGAAGAGGTTCACGATCGAGATCTAGAAAGAGATCCCATTCTCGTAGACGATCATCTAGACGTTCTAGGTCAAGGAAAAGATCCAGATCCAGAAGGCGGTCTAGATCAAGAAAGCGTTCAGGATCACATTCTCGTAAAAGAAGATCTAGGTCAAAGAAAAGGTCAAGGTCAAGACACAGATCCAGATCAAGATCAAAGGGAAGGACAGCAAAGAGAAGGTCAAGGACACCTAGAGCATATAGTAGAAGATCAAGGTCAAGGAGTCCTGGCAAGAGGAAAAGTAAATCACCAAAAAGAAAATCAAAGTCTCCAGAGAAGAAGAGGTCAAGAAGTAGATCACACCACAAATCTTTATCTCCTCCTAAGTTAGAGAGAGAAGTCTCACCATCTGACAAAGATGCTACTCCTAGCAGACCAATAATCCAAGGACCAGACACAACACTTACTCAAAGTGATGGTCCTCCAGCTATGATTAAACAAGAATATGAAAGTCTACCCAAAGAACCTGTTGATACAACTGTACCCAGCAAAAGATCAGTAAGCAGAAGTCACAGTAGAACTCCTCCTAAAAAACACTCAAGTCCTAGAAGAAGAAAATCAAGGAGTAGATCTCCCAAGAAGTCATCGAGGAGGTCAAGAAGTAGAGATGTACACAAAGACAAACTCAAAAGTTCAAAACCAACAGAAAGTAGGCGGAGCTACAAAAGATCAAGGAAAAGTAGGAGTAGATCACGAAAGAAGTCAAGGTCACGTAGCAGAGGCAGGAGAGACAGAGACAAAAGGAGAGAAAGAGATAGGAGTCGTGAACGAGAACGGGAAAAGAAGAAGAAGCACAAAGAAAGATCAAGAGAGACAGAGGAGAAAGTAAAAGAAAATAAAGTTTTAAGGAATTATGACGAAGAAGAGAAGTTACAAGAAGATTACAATAGTGAGACTGATTCATCAAGACCTGCTGAAGCTTCCATACCAGCAGACGACAGTAATCTACAACCTGTTGATATGGACATGAGTGATTGATTTCATTATTAGATATTATTTTATGAATGGCAGAGAAAAGTCAGTGAACGTTTTAGTGATTGGTTTAAATATTACACAATACTTTATGAATGACAGAGAATGCTTTTAATTGAATATATTGTTGATCAGAACAGTTAAATGAAGATTTACATGTATTGGTTAATTTTTATGCCTTTTTAATCATTAAGATTATAGTTCTCAATCACTTTATAAGAGGATGTATGCTGACATAGTACTGAAATGTTCTGTTATATGTATTGAAGGACTATAGTTCTGATAAATATGATAATGATTATCTCAAAAACATCTAAGGTAAAAATTATTGTCCCAGTAGTGCATTTATTACACTTCACGGAAGATGAAATTTAACGTGTATTTCTACATCTTAAAAGTTAGCTTTATATTGGTGTACAATGTATATGTCATGAAAATAAAACAGATTAGAGAAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034192	Domain	SREK1, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13165	SREK1, SFRS12; splicing regulatory glutamine/lysine-rich protein 1	-	Spliceosome	ko03041	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_10139-10.15 global RNA-seq network