Gene detail

Detailed information of Blon|HiC_7G000473 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_7G000473	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION	HiC_scaffold_7	38250471	38296056	+

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_7G000473

GAGGATTTCGGGACTAGACCTGCCGACCTAGTAGATGTTCTCAAGAAGTGTTTCAGCTCCGAACGCCTTCTCATTGCTTCAAGCAAACCAGACACGGACAGGGAGTCCACAGAAGAGGACATAGAGCTACTCAAGTATCGAGAGAAGGAGACAGCGTTCGGGAAGGTCATCGCAGTCCTCAAGCAACAAAGCCAACAACAGGAAGTGTCTATCGAGGCGTTTCACAACTTCATGCAGACAAATGTGGCAAGCATTAAGGATATGCAGGGTTCTTATATTGAACCACAACCATGTTTAAATCCCAGCAAAAACCCATTTGGTATGGATTCACTGACTGAACAAGCTGTGGATGTCCCGGTTCCAAAAATGTTGGCGCGCCTGACCAAGGAGTCTCTGGAATTGTACCAAATGCTCAAAGGACACTGCTGGGCCTTGGTGGCACATTACAAACAACAACAGAAGCTGACTACTTGTTACCTGGCCAAGCCACCAGAGGGCGCCATCGACACGCTCAACAAAGTGTGTGAGGACAGTGGCAGGCACCTCAAGACCTACATCGACTACGTTGACAGGGTCCTGGCAGATTTCGACTTGTGTAATTATGGAGATGATGGCAGCAACGCCGTGATACGCAGACTCAAAGATGATCTTGGCAACATTCTAAGCGAACATTTGAAAGTGATCTTTGTGATCACGAAGCAGCCAATGAACGTACAGAAGATAGTGCAGGCCAAGAGCGCCGCCATGTCAATGAGCGTGCGCATTCTCGGTGGTAAAGGACTGGGCATCGAACATTCCCTGCCTTCTGTTTCTGTGCAAGTCTACAGTGAGCTGAAGCTCGTGGCCGCACTCAATGCCGATCAGCCGACAAGTGATGCCGCCTGCAAGTCCATGGAGAATGGAACGAATGTGATGATGGAGTTGAAGCGTGCCACTGGCCACATTCAGGCCAATCTCAACAATGTGCTGATGCGTGGTGTCGAACGATTGGAACGAAGGGACAAGGAAGACCGGGTCACCGAGCACAAGCATGGCATCGTGTTCTACACCAAGGTCAACGTTTGCAACAAGCTCTACCCAATCAAGGCACTGTCGTTGCCCATCGTGCTAACGAGCCAGACTTCACAGAACGGGTCGGCCAAGGGTACGTTACTGTGGGATGCTGCCTTCTCCGACCCGAATCGGTCAGTCTACGAGGATGCGCAGAGTGTTCCCTGGTCCAAGATGAAAGAGGTTCTTATCGCCATCTTCAAGGAAACTGGTCGAGCATTGGACGAGAACCAGCTCAAATATTTAGCCCGCTATCTATTTAAAACAGGTCAGTTGCCTGAAGAGGAAGAAGACTTCTCTAAATGTATTCTTACGAAGGAGAAATTCCTCAGGGAGAAGGTAGCCGGGCGTGACTTCACCTTCTGGAGATGGATCTTCGCTTGTACGAACCTCATCACTAAATTTGTCAGGAAAGAGTGGACCGACAATATGATCTACGGCTTCATTGGGCGGCAGGAGTCAGAGAAGCTCCTCCGAGGGAAGAAGCCAGGCACCTTCATGCTTCGCTTCCGGGAACGCCGCTTAGAGGACAGTCAGCGAACTCTCAAGTGCGCATGTCTCGCATTAGCCATTGTCGGAAAGGACACCATCACAGGCGAGCCAAAAGTGGTCCACGTGAAAGACCACCTCACCCCAAGCGAGATCCACGAGTATTCCCTGACCAGGCTCCTGAGCAGTATGGTCGATGTGAACACCCAAGAGGCTCTACTCACCACGCTGTATCCAGACACCGACTTCAACGAGGTCATAAAGAACTACGTCCCAGACTCAGGTGAGGCAAGTGATGGCTACATGAAGACAAGACTACTCATAGGAGTCATGAACGGGAGGAAGGAAGAGCAAGAGTCGACGGATGGATCCTGCTACGAGGATTCGCTGGCTGCAAGCTCTCCTGATTGGAACATGTCGGACATTGGCAGCAATTTGCCATCAGTCTGCTCACCCCTGTCACAAGACTTGGAGAACATCCAAATGGAAGCGCTGATGTCTCCCAGCGTTGATTACCATCTGCTCCTCATCCCCCAGGGCTTTCTCGCCTCCTCTCTTTCTCCCCCCCCCCCTTATAACCCTGCCCGTCGCTGCCTCCAGCCATCCCGCCTCCTACCGCCTCCTGCTTCCGATCTCTTCTTTCTTGGGCTTCACCTCCCGGACCTCTCCACACTGCCTCTGCGATCATCATGCCTCTCACCGCCCATGGTCGAGGCCGGCCGCAGAAGCAGCAGAAGGGCGCCTGGGACATCACTCGACTCCCACGACCGCATGCTTAACCGGCTCGGGAGCCTCATGGAGAACCTCATCCTTGCCCAGGCCCCGGCCACCTCGCCTCCATCTCCTGCGCCGGCCCCCGGTGAGTCGTCTAGGGCCTAG

Transcript

Blon|HiC_7G000473

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	STAT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan
PF02864	STAT_bind	STAT protein, DNA binding domain	Domain	Interproscan
PF21354	STAT_linker	Signal transducer and activator of transcription, linker domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR001217	Family	Transcription factor STAT	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR012345	Homologous_superfamily	STAT transcription factor, DNA-binding, N-terminal	Interproscan
IPR013801	Domain	STAT transcription factor, DNA-binding	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR048988	Domain	Signal transducer and activator of transcription, linker domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11801	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006952	Biological Process	defense response	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007259	Biological Process	cell surface receptor signaling pathway via JAK-STAT	Interproscan
GO:0042127	Biological Process	regulation of cell population proliferation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-