Gene detail

Detailed information of Blon|HiC_6G001029 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_6G001029	DNA2/NAM7 HELICASE FAMILY MEMBER	HiC_scaffold_6	102045045	102069424	-

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_6G001029

GCGGCTAAGGCTGGCCTCGAACTGACGCTGATGGAGCGGCAGCTGACGCTGCATGGGGACGCCGTGATGCGGATGCTGACGATGCAGTACCGGATGAACGCGCACATTATGAAGTGGGCGTCGGACGAACTGTATGCTGGGAAACTCCATGCTCACTCCTCTGTCGCCAACCACCTCCTGAGTGACCTGCCGGGGGTGAGTGTGACTGAAGACACTCAGACGGCTCTGCTGCTTGTCGACACCGCTGGGTGTGGCCTGTCGGAGCTGGACGTGCCTGATGAAGTCTCCAAGGGCAACGAGGGCGAGGTTGATCTCTGCGTCGTACATGTCGAGAAGCTCATCAGGGCAGGACTCAAGCCGGCCGACATAGCAGTTATAGCACCATATAACCTGCAGGTTGAGCTGCTACGACTGAGGTTGAGCCAGAAGTACCCGGGTCTGGAAATCAAGTCTGTTGACGGCTTCCAGGGTCGTGAGAAGGAGGCAGTGGTCATGAGCATGGTCCGGTCGAATGTCAAGCATGTGGTGGGCTTCCTGGCGGAGGACCGGCGAATTAACGTGGCTGTGACGCGGGCCCGGCGCCACCTGGCGGTCGTATGTGACAGTGAGACAGTAGGCGAACACGCCTTCCTGCAGCGTCTCCTTGACTACCTGTCTGCGCATGGCGAGGTGCGCTCAGCCGAGCAGTACATCCAGGAGGGGGAGATTGACCCTACCTCGAAGAGACCAGACTTCCTGCAGACAAAGATAGACGACTCGACAGCCAGACACAAGAAGGGAGACGCACCCAAGTCAAGTAAGAAGAGCAAGCGGGCAAAGGAGCCGCAGAACCACCACCATGCAGGGCTCAGCGTGTCGCAGGGCCAGGCACCCGACAAGCCCAAGCGGGTAACCAAGGAGGAGGAAGCGGAGGATGAGGAACGGCTGAAGAAGATACTGACTGACTTCGTGCTGAACGAGTCGGTCACAAGCTATGACTTTCCACCCAGTCTTGACTCGCGACAGAGGTTCACCGTCCACGAGGCAACGGAGCGGCTAGGACTCCTGCACCTGAGTCAAGGAGAGGGAAGCGAGCGACACATGAGTGTTAGTAAACCCGCTGGTGGGCAGGCAAGTGGGCAGACAACTCAAGGACAGGGCAACATAAGTGCGAAGACTACTAGCCATATTGTGGAACCTGCAAAAAGGAAGGAGCCACAGAAGCCACCTGAACCGGAAGAATGTAAGCCACAAGGAAAGGAGGAGGCACAGGAAGGCAAAGGGAGGCAGCGAATAGAGGCGGAGAATGGAGGTGACTGCAAGCCTCAGCACGGCGGTCCAGGTTCAGGTGATGACAAAAGCAGTAATATCAGCAGCCAAGCCGTCACAAAATGCACAATCTGTGAAAAGCAGATTCCCAATGCCAATTACACTCTGCATGAACTACGCTGCACCACTCAAACGCCTGCCACAGATGCTGCCTGTGCAAAGCCGAAAGGCAAAACAAACCACCAGCCTGAATCGGGTGCGAAGAGCAAGAAGAGCGCAAAGAAGAAGCCAAAGCTCAAGCAGGAAGCGGAGGAGGACTTCGATGCACTGCTGGCCGCTGCCATGAGGGAGAACTGTCGCTGCAGCGCTGCTGGCTGTAAGGAGAGCATCACCACCATGGGACAGAAGTGTGCCTTCTGCGCACAGATTTTCTGCTTGAAGCACTTTATGGCCGAGGTGCATGGGTGTGGTGCAAGTGCGAGGTCCTCGGCGCGCCAGCTGGTGAGTCGCGAAGGCGTGCTGTATCGGGGCAGCGGGGTACCCGACAAGAAACCGTCCGCAACCCGGCATGCACATCTCCAGCGGAAGCTCGATAAGAAGCTTGAGAAGTTGGGAGCTGACCGCAAGGGCAAGGCCAAAATCGCCCTTCCCTCCCTTCCCCCACACAGTGGAGATATCCCCCACCCCTTTTCCCACAATCCCGACAAATCCCAACACCCACCAACACCCACCAACCCCCGCCTCTCCTCTACCCCCTCCTTCCTCTCCCACTTCCCCTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCGCCCCTCCCTCCCCTCCCAATCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCTCTCCTTCCTCTCCCTCCCCTTCCTCTCCCTCTCCTCCCACTCCTTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCAGTCCCTCCCCTCCCACTCCTTCCTCTCCTCCTCCCTCCCCTCCCACTCCTTCCTCTCCTCCTCCCTCCCCCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCCTCCCCTCCCACTCCTTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCCTCCTCTACCCCCTCCTTCCTCTCCCACTTCCCCTCCTCCTCCCCCTCCCCTCCCCTCCCACTCCTTCCTCTCTCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCCCACTCCTTCCTCCCCCACTCCCTCCTCTCCCACTCCCTCCCCTCCCACTCCTTCCTCTCCCACTCCCCCTCTACCCCTCCTTCCTCTCCCACTTCCCCTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCAACTCCTTCCTCTCCCACTCCCTCCTCTCCCACTCCCTCCTCTCCCACTCCTTCCTCTCCCACTCCCTCCTCTCCCGCTCCCTCCTCTCCCACCACACAACGGAAGCAGGAAGCTACTCACACACCGCTCAGAGCGCCACCTTCTGGATCCCGGACCACTAA

Transcript

Blon|HiC_6G001029

GGCGGCTAAGGCTGGCCTCGAACTGACGCTGATGGAGCGGCAGCTGACGCTGCATGGGGACGCCGTGATGCGGATGCTGACGATGCAGTACCGGATGAACGCGCACATTATGAAGTGGGCGTCGGACGAACTGTATGCTGGGAAACTCCATGCTCACTCCTCTGTCGCCAACCACCTCCTGAGTGACCTGCCGGGGGTGAGTGTGACTGAAGACACTCAGACGGCTCTGCTGCTTGTCGACACCGCTGGGTGTGGCCTGTCGGAGCTGGACGTGCCTGATGAAGTCTCCAAGGGCAACGAGGGCGAGGTTGATCTCTGCGTCGTACATGTCGAGAAGCTCATCAGGGCAGGACTCAAGCCGGCCGACATAGCAGTTATAGCACCATATAACCTGCAGGTTGAGCTGCTACGACTGAGGTTGAGCCAGAAGTACCCGGGTCTGGAAATCAAGTCTGTTGACGGCTTCCAGGGTCGTGAGAAGGAGGCAGTGGTCATGAGCATGGTCCGGTCGAATGTCAAGCATGTGGTGGGCTTCCTGGCGGAGGACCGGCGAATTAACGTGGCTGTGACGCGGGCCCGGCGCCACCTGGCGGTCGTATGTGACAGTGAGACAGTAGGCGAACACGCCTTCCTGCAGCGTCTCCTTGACTACCTGTCTGCGCATGGCGAGGTGCGCTCAGCCGAGCAGTACATCCAGGAGGGGGAGATTGACCCTACCTCGAAGAGACCAGACTTCCTGCAGACAAAGATAGACGACTCGACAGCCAGACACAAGAAGGGAGACGCACCCAAGTCAAGTAAGAAGAGCAAGCGGGCAAAGGAGCCGCAGAACCACCACCATGCAGGGCTCAGCGTGTCGCAGGGCCAGGCACCCGACAAGCCCAAGCGGGTAACCAAGGAGGAGGAAGCGGAGGATGAGGAACGGCTGAAGAAGATACTGACTGACTTCGTGCTGAACGAGTCGGTCACAAGCTATGACTTTCCACCCAGTCTTGACTCGCGACAGAGGTTCACCGTCCACGAGGCAACGGAGCGGCTAGGACTCCTGCACCTGAGTCAAGGAGAGGGAAGCGAGCGACACATGAGTGTTAGTAAACCCGCTGGTGGGCAGGCAAGTGGGCAGACAACTCAAGGACAGGGCAACATAAGTGCGAAGACTACTAGCCATATTGTGGAACCTGCAAAAAGGAAGGAGCCACAGAAGCCACCTGAACCGGAAGAATGTAAGCCACAAGGAAAGGAGGAGGCACAGGAAGGCAAAGGGAGGCAGCGAATAGAGGCGGAGAATGGAGGTGACTGCAAGCCTCAGCACGGCGGTCCAGGTTCAGGTGATGACAAAAGCAGTAATATCAGCAGCCAAGCCGTCACAAAATGCACAATCTGTGAAAAGCAGATTCCCAATGCCAATTACACTCTGCATGAACTACGCTGCACCACTCAAACGCCTGCCACAGATGCTGCCTGTGCAAAGCCGAAAGGCAAAACAAACCACCAGCCTGAATCGGGTGCGAAGAGCAAGAAGAGCGCAAAGAAGAAGCCAAAGCTCAAGCAGGAAGCGGAGGAGGACTTCGATGCACTGCTGGCCGCTGCCATGAGGGAGAACTGTCGCTGCAGCGCTGCTGGCTGTAAGGAGAGCATCACCACCATGGGACAGAAGTGTGCCTTCTGCGCACAGATTTTCTGCTTGAAGCACTTTATGGCCGAGGTGCATGGGTGTGGTGCAAGTGCGAGGTCCTCGGCGCGCCAGCTGGTGAGTCGCGAAGGCGTGCTGTATCGGGGCAGCGGGGTACCCGACAAGAAACCGTCCGCAACCCGGCATGCACATCTCCAGCGGAAGCTCGATAAGAAGCTTGAGAAGTTGGGAGCTGACCGCAAGGGCAAGGCCAAAATCGCCCTTCCCTCCCTTCCCCCACACAGTGGAGATATCCCCCACCCCTTTTCCCACAATCCCGACAAATCCCAACACCCACCAACACCCACCAACCCCCGCCTCTCCTCTACCCCCTCCTTCCTCTCCCACTTCCCCTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCGCCCCTCCCTCCCCTCCCAATCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCTCTCCTTCCTCTCCCTCCCCTTCCTCTCCCTCTCCTCCCACTCCTTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCAGTCCCTCCCCTCCCACTCCTTCCTCTCCTCCTCCCTCCCCTCCCACTCCTTCCTCTCCTCCTCCCTCCCCCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCCTCCCCTCCCACTCCTTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCTTCCTCTCCCACTCCCTCCTCTACCCCCTCCTTCCTCTCCCACTTCCCCTCCTCCTCCCCCTCCCCTCCCCTCCCACTCCTTCCTCTCTCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCCCACTCCTTCCTCCCCCACTCCCTCCTCTCCCACTCCCTCCCCTCCCACTCCTTCCTCTCCCACTCCCCCTCTACCCCTCCTTCCTCTCCCACTTCCCCTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCCCCTCCCTCCCCTCCCACTCCTTCCTCTCCAACTCCTTCCTCTCCCACTCCCTCCTCTCCCACTCCCTCCTCTCCCACTCCTTCCTCTCCCACTCCCTCCTCTCCCGCTCCCTCCTCTCCCACCACACAACGGAAGCAGGAAGCTACTCACACACCGCTCAGAGCGCCACCTTCTGGATCCCGGACCACTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01424	R3H	R3H domain	Domain	Interproscan
PF01428	zf-AN1	AN1-like Zinc finger	Family	Interproscan
PF13087	AAA_12	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000058	Domain	Zinc finger, AN1-type	Interproscan
IPR001374	Domain	R3H domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035896	Homologous_superfamily	AN1-like Zinc finger	Interproscan
IPR036867	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR041679	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR047187	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR050534	Family	Coronaviruses polyprotein 1ab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043139	Molecular Function	5'-3' DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-