Gene detail

Detailed information of Blon|HiC_6G000948 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_6G000948	UNCHARACTERIZED	HiC_scaffold_6	93906197	93931523	+

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_6G000948

ATGGCGGCTGCCATGAAGCCTGTCAACCTGTCAAAATCACAGAAAAAGGTTGCAAAGAAACAACAAAAGAACCGTCATACATTATTTAAGCGCAATGGCATTGTTCCACTCGATTTCCCCACTCATCATCTGGTCGTGGCGAATGGCGGACTAGATAACAACGTTAGTCTTGATGATCTGCAAAGTGCCTTCAGCGTGTATGGCGAGGTGGTGGACGTGGTAATGCAGCCCCAGAAATCATATGCCTTCGTTAGCATGTCCAGCGCACGTCTTGCAGAGGCCGCCTACGCGGGGCTGAATGGCCACCCCTTGGTCAGAGCGAAAAATGGTGCTGCTGTCACTGATGTCATACTCTATTTGGATTATGTTGATTTGGTTCCAGGCCTTACGATGCCATCATCACGCCACCCACCGGGTCTTATCCTCTTAGAGAACTTTGTCACTGAGGAGGAGGAGACGATCCTACTTGAGTCGATTAAATGGGAGCAGACTGACGCGAATTTGTCTTCTGATGGAGTGATGAAACATCGGCGCGTGAAGCATTATGGGTACGAGTTTTTGTATGGTGTCAATAATGTGGACCGAAGTCGGCCCTTAGAGCACGGCTTGCCGCCCGCCTGTCGCCTCGTCACAGACCGCCTAAGTGCCGCCGGACACGGGCCCAGCGCCACTCCGGACCAACTCACCGTTAACCAGTACCAGCCAGGCCAAGGTATCCCGCCACACGTGGACACACATAGTGCATTTGAGGACGTGATTGTATCTTTATCATTAGGATCCCAATGCGTGATGGACTTCGGGCATCCTGATGGTGCGACCACCCTCAGCATGGTGCTGCCCAGGCGCAGTGCCCTGGTGATGGCGGGAGAGTCGAGGTACATGTGGACACACGGGATCACCCCGCGCTGCTCCGACATTGTTCCGGTTGAAGTGGACGGGGGGAAAGCCGGAGAAGGAAAGCCCATGCGGCTCACACTCGTGAAGAGGGACACGAGGACTTCGTTTACCTTCAGGAAGATTAGAGATGGTCCATGCACATGCAAGTTTGCTGAGCAATGCGATTCACAACAAATGCAGAGCAAACGGGCCGAGAAGAAACGGTCGGTTCTGCAAGTGCCCAACTCAGATGAGGAGGCTCGGCAGGTGGAGCGGGAACATGTCCACAAGGTCTATGAGGAAATCGCCGAACACTTCAGTGACACCAGACATACTGCGTGGCCTCAGGTGGCCGAGTTCCTCAACAACCTACCAGAGGGCGCCATTGTAGTGGATGTAGGCTGTGGCAACGGGAAATACTTGGGAGTCAACAAAGCTTCGTTTAATGTGGGGTGTGACCGGAGCGCCGCGCTGTGCGCCATCTGTCGGACTCGAGGCTTCCCAGTGTTCGTCGCCGACGCGCTTCATGTTCCGCTGCGCCCCCAAGTGGCAGACGTCGTCATCAGCATTGCGGTCATTCATCATCTGTCCACCCAGTTGCGGCGCCAACTCGCCGTGGAGGAGATTGTGCGAGTGCTGCGCCCTGGTGGTCACGCACTCATCTACGTGTGGGCCATGGAGCAGGAGAAAGACACTGTCAAATCAAACTACCTCAAGGACACCCGCATAGACCGCAAGGACTGCCTCAAGTCACAGGAAGAGGACCTCCTCAGGGCTGACGTAGAGAGAGTGGCACTCAACGAGTGTGGCCAAAAGCAGGACTACACTGGAACAAACATTGTAGATTCAGACTCGACGAAAAGTGGCGATTTTGAAAACGGAGAACCATGTTGTAAAACAACGTATAGTAGTGATTCCATAAAGGGAGTTGTGTATTCAACGCATAAAGTCGGCAGAGACAGTAATTATGTAGATTTGAAAACGATTTCAGTTTGTGATTCGGACGAACCTGCTGTAGACGGCTGCGTCGCTGATGACGGCTTTCTTCCGATAGGTGGCGCCACGGGAATGGCGGCTGGGGAGGGTACGCTAGGTGGCGCCACGGGCACGGTGGACGGAGAAGGAATACTAGTTGGCGGCCCGGCGGCTGGGGAGGGACCGCCAGGTGGCGCTGCGGGGACTTGTGTGGCCCAAGCCGTGACGATACGCCGCACGCGGGACCTTCACGTCCATGTAAATCGAACACACTTTGAGAACCAAGACCTTCTCGTTCCGTGGCACAGCAAACCGCGGCAACGGGGAAAAGCAGCGGCAATGCCGCCGGACACGAACACAGGCAGAGTAGTGCACAGGTTCTATCATGTTTTTGAGGAGGGCGAGTTGGAGAGCCTGTGCCTGTCTGTAAACGGGGTGGGGTTAATCAAGTCGTATTACGACAAAGGAAACTGGTGCGTCATCATAAAAAAAGTCACGCCTTAA

Transcript

Blon|HiC_6G000948

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF08241	Methyltransf_11	Methyltransferase domain	Domain	Interproscan
PF13532	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013216	Domain	Methyltransferase type 11	Interproscan
IPR027450	Domain	Alpha-ketoglutarate-dependent dioxygenase AlkB-like	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR037151	Homologous_superfamily	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Interproscan
IPR051422	Family	AlkB Family tRNA Methyltransferase/Dioxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13069	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0002098	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008757	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0030488	Biological Process	tRNA methylation	Interproscan
GO:0106335	Molecular Function	tRNA (5-carboxymethyluridine(34)-5-O)-methyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-