Gene detail

Detailed information of Blon|HiC_4G001231 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_4G001231	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	HiC_scaffold_4	103306268	103317900	+

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_4G001231

ATGCAGATGGCGGCAAAGGTGGTTTACCACGACCACTGCTATGTGATGCCGGTAAAGCAGGGGGCAACATCTCTCCTGTTTCCTTCCGTGTCAGGCCTGAACACCCGTATCCAGGGTGGGAAGGTCGTGGTGGTGACGTCACCAGACCTGCCACCAACCTCCCTGAGTGGGGCTGAAAAGCCGGAGGAAGAGGAGCTCAATGAGGGCATAGCACACGATCACGGTTACTATCACTCCACTTCGGGCTCAGAGGAATCACAGGATGAGAAGCCACCGGAGAGTGGCAATACCACCAGTAAAAGCCTGATTGCCTTCGATCTGCCACCGCCGAATAAAAGTGGCTCAGCAATAGCATTCGGACCGACTTCAAGTAATATGTCATTTCCAGACTGTCAGTTTTCTACACTTCCTGCACAGATTTTTGCTCAGGACGAAGAGGAGGGCACCTCTTCTGTGGCACTTGTAGAAGCGCAAGCAGCAGCAAAGCTAGAGTTAGGTGCCGAAGCGTTAGTATCACCACATCCAGCTGAGCACACAACGCGAATATTGACAAAGGAAGCAGTCGAAGTGAAGAAGCGATATCGGAAAACGAGTGTCACTATTGTGAAGTCACCACCACCTCCACCCCTTGAGTCGGTCACTCCAACACGCAAGGGCACCCGTCAGAGGAAGCCCAGCACCAAGGTGAAAGAGATGCAAGAAGAGGTCGAGGAGAAGAAGTCCCCGACACGTAAACGCAAGGCGGTGATTAGCATCGCCCGACCTGAGCTTGTGCCTTATACACCCACCCAATCAGAAATAAATACCACAACAATCCACACCATTCTAAAGTCATTACCAACAGCACTAAAAGAGCGAAGTCGACTCACGGAAACAGATGTACCTTCATCGGTGATACCGAAGAAGATTAAAAAGCTGTCGGAAAGCAAGATTATTGCACAGAAATCAATTCCAAAGAAACCTGGCATCAAGAAGAGAAAAAAAGAACACATGGAAGACGAAAATGAAGCAGATAGCTCTATAGAAGAAGAATTGTTGCCACAGGTGAAAAAGTTAGCGGCAGCTGCTCCGATATTGCCAGCAACAAAGGTACAACCTAAAAAGGAGGTTGTAAAGGTTAAACCTGCCATATGCCCGGTTCAATCAGCACAGGAAGCAAAACCTGAGCCCGAGCCTGAGCCAGAGCCCGAACGCAAACCTGCACGGCGAGGACGACCACCGAAAGCGAAGAACCTTCCAGAAGCGCAAGAACACATGGAAGACGAAAATGAAGCAGATAGCTCTATAGAAGAAGAATTGTTGCCACAGGTGAAAAAGTTAGCACAGGAAGCAAAACCTGAGCCCGAGCCTGAGCCAGAGCCCGAACGCAAACCTGCACGGCGAGGACGACCACCAAAAGTGAAGAAGCTTCCAGAAGCGCAACGAAAGAATATTCCAAGCAAAAAGACACCGGTGAAAAGGGAACTTGCCCAGCCTGAACCTGTACCTGTACCAAAACCTGATGTTCCAGAAACAGAGACTCAGCACCGAAGTTCACGAAGACGAACGCAGAGCATTGTCGACCAAGTGCAGGACGTAATCAAAGATATTAAGCAAGTAGAGTGTCAAAATGCAGAGACAGCTAAGGAGACGAAAACGGCCAGTAAGCAGGACGTAGGACAGGAGCAGGATGCACACAGTACGAAAGACAAGGCGGCAGAATCTCAAACCGAACCAAAGAAGAGGGGGCGTGGACGTCCTCCGAAACAAAAACGGAAAGATGTGGAGAAGACCAGTCCATCAACAAGCTCAGCAAAGACCCCGGTGCCCAAAGCTTCGCCGGTGGTGACGCCACTGGCGCGGGTGGGACGCGGGTCGGTGACCGAGCAGACGGCACCTACTCAAGAGGTCATGGTCGAGTCGAAACTGGCGGCAACAGCGAGAGAGATTCCCCCCTCATCGAAAGAACCAACCCCGACAACAGTAACAATAACACCAGTGGTGAGCCGAGGTCGGGGCAGACCACCAAAACACCCGCCCTCCGGACAGACGCCACAACCAGCGAAACAGACTCCGCAACCAGCGAAACAGACTCCGCAACCAGCGAAACAGACCCCGCAACCAGCGAAACAGACTCCGCAACCAGTGAAACCGACGCCGACCGCAAAACGAGGCCGGAAGCGGAAAGTGCCCGAAGAGCCTCAAGTGGCGGAGTTGGAAGGGTGTGGTGAGGACTTGACAATCCGCTTTATTCCGAATGGTGATGTGACCAAGAACACGAACCACTGGGGGTCGGCCATCCCATCAGACCTGCTACTGCGTGTTTTCAAACAGGTGATAGCTGTCGAGGGGGCGTTGCCGTTCATGTCCAGGCTGTCGAAGGTGTGCCGGCTGTGGTACGAGGTGGGGCGCCACCCGTCCCTCTGGTCACGTGTCGACCTGTCGGCGCCCTGCGTCCGGAAGTACAAGAAGTCCTTGGTCTGGCTGTGCCGGCACCGCATGGCCGCCACCACTAGCCTCACTCTGAGTGGCTGGAACAACCTCGTGGACGCTGACCTGGAGTCCGTCGTGCGACAATGCCGGGCCCTGGAGACGATGAACCTGTCTGGCTGTAGCAAGTTGTCGTCTGAGTCAATATACACCATCGCAAACCATTGTAAGCAACTAACCCGTGTGGATCTGTCAGAAGCTTGGCCCTCGTCTGGCCAGTATGACAAGTCACACGAGTCCATGTGCTACTTGGCCGAGACGGTGGGCACACGACTCAAAGCGCTCAACTTGGGCATCAACACCATGGTGCAGACCGAAGACATCCTGGACGCGCTGATGCTGCACTGTCCGAACCTGGAGGCGCTGGACCTGTCCAACTGTCTGTTCGGCAACTGCCTGCTGAAGCTTCCCCTGGAGCACCTCCAGGAGGCCTGCCCCAGGCTCAAGCACCTCCTCCTCGGCAAGTCGCTCTTCCAGGTCAAGGATCCCACAAACAAGGAGCTTGCGAAGTGCCCAGGATTTGCTCACCTGGAGACGTTGGACATATCACGAAGCTCATCCAATGCCAGCAAGTTAAAGCACATCACCGACGACGTTCTAAAGCGATTACTGCGGAACGCCTTTGACCTGAATCGGCTGGACGTGAGTGGTTGTCGCCACATCACCTCCGAGGGCTTGGAGTCGTTGCCCATCGTGTCGCTGAAGGCCCTGAGCCTGGCGCACTGTCGCGTCGTCACACAGCCATCCATCGTCGACGTCATTTTGAAGTGGGGATTCAGCTTACAGGACCTCGACCTCAGCGGGAACTCCGTAGATGAGCAAGTTATCCTCCGGCTGGTAGACGGGTGCCCCAACCTGCGGCGTCTCGACCTCACCGGGTGCCGGGGCCTCCCATCGGCCATGCGCAGGGAGCACTGCGGCGACAGCGTCATCATGGCACTGCGCACCAGCCTCAGCACCTCGTCTGCGCATGCGTGA

Transcript

Blon|HiC_4G001231

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR017956	Conserved_site	AT hook, DNA-binding motif	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR047922	Domain	F-box/LRR-repeat protein 6, F-box domain	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-