Gene detail

Detailed information of Blon|HiC_3G001088 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_3G001088	TRANSCRIPTION FACTOR GATA FAMILY MEMBER	HiC_scaffold_3	87378971	87388895	+

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_3G001088

ATGTTGTTATCGTGTGGGAAAGTGGCAGCGGCTGACAACATCAAGATGAAAGCTGATAAAGAAATGGTGAGCCATGGTTTGCGCGAGGCAATTACGCTTCTGTGCAAAACCGGCCTGCCTTTTCACAAAGAGATCTGCGTCGAGGGACTGCTGGGGATCACCGTGGATCAGAATGAAGTCTTTCTCGTGAGCATCAAAGACAACATTGTCAAAACGCTGACGGACGAAGATAACGGGCTGTCTGCTTTCGATCAGCAGTACAGGGATTCAGGCAGTGCTGTTAACTCGCGAGAATCCACTCCTGAGCGGCCGGTCAGTTTGGTGAGTCGGGGCAGCAAGACACTTGAGATTATCGCACGGCTGTCTTCACAACAATACAATTCCCAGAATGTCCGTCAAAGAAAGAGCAAGACGAACAAAGCCCCCAGAAAGTCTAGCACGCCGACGCAGATCCTACCGACGCAATCTGCACGCGCCGAGAAATGCACTCCAACCAAAGACAGTTCCCCGCCCACCGACCCCAGCACCACTGGTTCTGCGGTCGGGCCCGTGCCCCCCGTGAGTTCCCGCATTCCAACCGGTGTGGCTGTCTCACAGATGGCACAGATTTACTGCACTGATAACCGAACCAACGCAGAGATCCGCGCTGTCAACATGAACAGACATATTCTCAAAGTGCCTACCACATCCCACGTCATTCACCACCGACCAGCAGAGCCCAAGGCCCTCGCGATATCGGACCAGCCGGTGGACCTGCACAAGCCCCGAGTGTCGGACCAAGGAAGACCCGATGAGGCGTCGTCTTCAGTGGACGACTCTGGAGACGCCGCTGCCATGAAATGTGCCTACAACAACAGCGGCTCCACCCCGTCTAGCTACACCTCTCCGCAGTCGGAGCCTGACTTCAGCCCCCTCACAATTGACCTTGAACCGTGCTCCACCACCAAGCTACAATCCTCCTCCGAGACCACTAATGGACTGAGCAGCCAGGATTCTAGCAATAAAAAGAACTATGTTCTTATTGCGCCCACACCACAGGTGCAAGACGAGCCCATGGCGCTCACCACGTGCCACAGGTCCCAGCCCAACTTGAGCAGCTCGCACACAACCAGCCCGCCCCCAAGCAGCTCAACAGTAGTCAGGCAGTGGGCGGCCAAGTCAACAGCCTCAGAAGGAGTTGGGGGCCTGGACCTCTCGGGGATTAGTGTGTCTGATGGACCCAGCCCCCTGGTTGTGATCAAAGGCGAGCCTCAGGACTTGGAGAATTCATACAGTGAGTGCAGTAAGAGCCCAATCGCTCCCGGGTACTCCCCGTCCAAGGGAGGCGCCGATCCCCACGTCACCATTCAGTCGTTGCTCAACTCGAGGCTCGGGGTTCCCCTTGGCAACTACATGGGCAACCTGTCCTCCAACTCCATTCCATATGCTTTAGATTTCTCCGGAGCCCAACGCACCCCTGCTAAGGGAACAGAGGCGCCACTGTTGCAGGTACCCTCACTTTCTACGGCGTCATATGTGAGTTCGCAATCTTATTTAAATCTCTCATTCCTGGGATCCAGTCCAAACACGAGCACAGCAAACAGCAGCACAGATTCCGAATCTGCCAAGGGCCGCAGCCTCTCATCCAGCGTGGCGCGGAGGTCGGGCGTGTGTTGCGCCAATTGCGGCGCCACTGCGACAACGCTGTGGCGCCGTAACGCCGAGGGGCTTCCCGTGTGCAACCCGTGCGGCCTCTACTACAAGCTCCACAACGTGGACCGGCCGCTGTCGCTGGTGCGCGGTCAGATCTACTCCCGGAAGCGGAAGCCACGCGGATCGGGCGGCGGTGGCGGCGGTGGAGGTGAGTCGGACCACTCGGACTCTCCGGTACCTAAACAGGTGAAGCTGGAGGCGGGCGGCGCCGGGGACCAGATCAAGGTGGAGCCGGCGGCCGGCAGCGAATCGCCCAAGTCGGCCGGCAGTTCGCCGGGGAAAGAGGCCGGGTCGCCGGGGGAGGACAAGTCTCAGCGGTCACAGGCAGCAACGGCCAGCCCAACTAAAGCATCCTCCTCCTCTTCCTACTCCTCAGCCTCTTTGCCAGACCGCTCCTTCGGGGAGTATGAGGAAGGGGATGAGGCAGGGGGAGGGGGCGGGTCCCAGGCTGGCGACTCGTGCAGCAGTGTCTAG

Transcript

Blon|HiC_3G001088

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-GATA

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00320	GATA	GATA zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000679	Domain	Zinc finger, GATA-type	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR039355	Family	Transcription factor GATA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10071	TRANSCRIPTION FACTOR GATA FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-