Gene detail

Detailed information of Blon|HiC_15G000045 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_15G000045	CASPASE-ACTIVATED DNASE	HiC_scaffold_15	4680482	4715666	-

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_15G000045

ATGTTTTCTTATTCTGCTAATAAAAATATGCAGTTTAGACCTTTTAGGGTAAGGGATATCGCTGGTAGCAAACGCTATGGAATCGCAGCAAAGTCATTGTCGGATTTAGACACTAAAGCCAGGCAGAAATTTGGGGTAGCAGAGGGCGCTGCGGTTAGTCTGGTTTTAGAGAAGGATGGAACGGAGGTAGACGAAGATGAATACCTGCAGATGCTGCCCCATAATGCCGTTCTTGTTTTTGTTACCGAAGGAGACCACTGGACTGGAGGTAGGTATGTGGGGGAGCCTGGATCTCCAATCACATTCACAGGAATATGTACAAGATTTGATGGTTTGGTATTCTTGTTATTAGGCCAAGTTAATCTAGGTAGGCATCTGCGTCTTGACATGCTCGGCAAGCTGTCCGCCTCCCTCTCACTCAACGTCGGGGCGGAGAGCCGGGCCGACGACAAGCAATGGTTCTCAGATATTCCACGAAAATATCAAACAAAGACTGCATTCATGAGGGAAAAGGCACGTGTCAGAGTTCGTGGATATTTATATCATACTAAAGATTTCATCACCAAGCAGACTATTAAGAGTCGGGTTCGAAGTCGACTGGATGGTGTGTTGGATGACTTCATCCAAAGACTGAAACAGGATGACTACTTTTCAGATTACTTTGCCAGGACATCGGGGAGACGCGGGGCGCGCATGTGCGACGTCGACGGCTGGTTCCCGTGTGAGGGCTCGTTTGACGTCGTCACGTGTCGGCACCATGACCACCGCATCAACCCTTACGGCAGCAGGGAGAGCCGCATCCTCTTCAGCACCTGGGACCTGGACCATGGGGTGGAGAAGAGCCGGGCGGTGCTGCCATGTCTGAGGGATGCTGCGTGCGCAGCCAGCGACTCGCAACAACTCAATGTGCGCTACTTCTACGACCTGCTCTTCACACGACGCAACATCAAGCTGGTGCACCCGGTGTGTCACAACAAGGCGGTGCACGCCACAGCCACCTGCGACCCGGCCAGACTGTTTTTAGGAGCAATCCACCGACTGTTGAAGACTGCTCCCCCGGCAGACGGGTATCCAAGTGCCGGGCTGACACATTCACCCCACAGTGGCCCCACAGCCCCATGCAGCATAAACCTCCCCCTTTCTAAGGCCTTGCAAAATAACAAACTCTTGTTGCTGCCTGTTCACCTTGAGCAAGCTAGGCACAGCTCCAAAATGACTGAGAATAAATATTCGGCCGATTATGCCAAAATGGGCACATCGGGGTGTAAAAAATGCAAGCAGAAGTTACCGAAGGGGTCTTTCCGCATTGCGAAACTCGTGTCAAATCCGTTCTCAGAAGAGGGTGGAGATATGAAGCAGTACCACCACCCACGCTGTATATTTGAGACCTTTGTTCGCGCGAGAGCAGCCACAAAAATTATAGAAGAAACTGAGGATCTGATTAACTACAGCGAATTGGAGGATGACGATAAGCAACTTGTTAAAGATCTTATAAAAGAAACCCTCGAGAAGAAAGGAACCCCCAAAGGAGGGAAGAAAACCCCAGTAAAAAAGACGCCTGTAAAGAATGCCGCAGCTGCCACCAAAGCGCCTGCGGCAGCTGCCACACCATCTACGCCAAAGCCAGGAGCACCCGCACCAGCGCCTTCCGCAGGTACCAGCGCTAAGATGGAGAAGGACAACTTGTTCCGCCAGTTCAGGCGCATGTGTGCAGAGATAGCCGAAGAGAGCAGCTACACTGGCAAGACTGCCATCCTCTCAACATTCCTCAAAAAGGGCAGCTCTGGAGACGGGTTCCATGGAGACAAGTACATCTGGTTGAAGCTTCTGTTACCAGGAGTCGTCAAGACGGTATATAACCTGAACAGCAAGCAACTCGTGAAGATCTTCGCCAAGATTTTTGGTGCCAGCGAGAGTGCGATGGTGGAGGACCTTGACAATGGCGACGTGGCGGAGACGGTGTTGATCTTCTTTGAACAAAGCACCATCTGCCCTCCTTGCAAGAAAAGCACCATCAGCATCATCGAT

Transcript

Blon|HiC_15G000045

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00645	zf-PARP	Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region	Domain	Interproscan
PF02017	CIDE-N	CIDE-N domain	Domain	Interproscan
PF04675	DNA_ligase_A_N	DNA ligase N terminus	Family	Interproscan
PF09230	DFF40	DNA fragmentation factor 40 kDa	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001510	Domain	Zinc finger, PARP-type	Interproscan
IPR003508	Domain	CIDE-N domain	Interproscan
IPR012308	Domain	DNA ligase, ATP-dependent, N-terminal	Interproscan
IPR015311	Domain	DNA fragmentation factor 40, C-terminal	Interproscan
IPR036599	Homologous_superfamily	DNA ligase, ATP-dependent, N-terminal domain superfamily	Interproscan
IPR036957	Homologous_superfamily	Zinc finger, PARP-type superfamily	Interproscan
IPR039729	Family	DNA fragmentation factor 40	Interproscan
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13067	CASPASE-ACTIVATED DNASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003910	Molecular Function	DNA ligase (ATP) activity	Interproscan
GO:0004520	Molecular Function	DNA endonuclease activity	Interproscan
GO:0004536	Molecular Function	DNA nuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006309	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-