Gene detail

Detailed information of Blon|HiC_11G000372 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_11G000372	BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1	HiC_scaffold_11	36741111	36767415	+

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_11G000372

ATGAGTCAACGAAGACGGAGTTCACGGAAGATAGAGGAGACTATTGGACTCTTGCAGAAGAATTTTGAATGCGCTATCTGTCTCGAATTGATGCAAAATCCAGTGACGACAAAATGTGGCCATATATTTTGCAAACACTGCCTGTTTGTGACGATCGGGAACCAGCGGGATGCTCCCTGCCCCCTGTGTAAGATGTCCTTCACAAAGAGGAGCTTACAGCGCCTCCTGCATTGGAACGAGATGTTGGAAGCAGTGGCTAACCTAATCAAGGCTTATGAGGCAGACACAGGTTCTACATATGAGCGGTCAATGATGAAACCAGTAACACGGACCTACGCAAGGAGAATTACCCCACGTAAACTGCAAAAAGCCGAAGAGGATGCATCCTTTGCTTTGGTGAAGACACCAAAGAAGCAATCATCAAGAAGATTATTCGTCGCCCGTGGAAAGAAGACCCCTGAGCGTCGTAGAGTAGAAACTGTTGCATTCACAGCATCAAGTCCAGAAGACCCGTATACTTTTAGAATTAGTCAGAAGAGTCCGAAAAAGAAAGGGAAAGGCCGGAGAAATTGTGTTGAACTGGAAATGACATCTATGCAACATGGTGCTGCTAAAGGATTATCAAATAAGAACAAAGTAGGAAGACGGTCTGATGAAGTCAAAGTCATTGCCGACGAAGATCCTGCTAGTGGTGAGGCAGAGATTGAGTCGATGGTTGAGATGCTCTCGATGGCTGAGGATCATGAGCTACTCTTTAGTCAGCATTTGAGAGAAATGGCTGGACAGTGTCAGGAGAAAAACCAGCAAGATGCAGATATCCAAGAGGTAAAGCCTATCTCCGCAGAAGAAATCGAGATTATCGATGGAGAAATGGAAGAAAATGGTCCAAATCAATCCACTGTCCGAGAAGAGCGAGACAAGGGTGACCGTGATCTAACCATTATCAAGGTCACTCCACCAGCGCTCAAGGTCAGGCAGTCAGTAAGTGTCCAGGACCCAGAGCCTCTTCAACAGGACCTCACCAATATGCTTGAAGAGAAAGGTGGCCGCATGATGCCAGAAACAGCAGATGAGAGCAAAGCGGAATGCCCAAGTGATGCCGAGTCTGAATCAGGGGTAGAGTCAATAGTCCTGGAGACGCCGGATATAAAGGTGACATCATCAAAGTGGCCAAAGAGGTATGGCAGCAGGACCGGAGCAGATGTAAAGAAGTCACCCCTCTTCAGATCTGTGGAAACTCCAGCAGCAACAGCTCCTCTGGTGGACTATGATGACGATGATGATATAATTCTCCCGTCATTGAAGCCCCGTCAACGCCCCTCACGACCTTTGCAAAATGAAGATACTACGGGCTTATCAGACGATGAGATAGTGGAGCTTGAGATGAAGAAGGAACAGGATGATGAGGAGGATGTGGTGGTGAGACAGTCCAAGTACAAGTCGCGGGTGAATGTAATTGAGGATGATGTGAGTGCTGATGAGGGTGACATTGAGACTGACTGCAGCACTCCAAGTCGTCATAACCTCACCAGTTCCAGCGCCTTCTCCAGTCCCAGTGACATGCAGGGCACAGAGCAAAAGGAGCACCTTGAAATGGATGTTGAGAAGATGGAGGCGGAAATTGAACAGATTGAGGCTCAGTTGGCAGGGAAAAATAGGCGCGATAAAAAACAGGATGGAGAGAAAGCTGATGAGGTTGACGAAGAAGTGCAGGTGGAGTCGGATGTGGTGCCAGATACCGACTGTCCACAGTTGTGTGGCACCTCACAGCATTCAACTCACTCTCGACACTCGGAAAGTGATCTGCAGGCAAGGTTCAAGACCGCCTGGCAACAGGAGTTAGGTGGCGTATGTGATCCTGGAAATGATGAACCAGAGTTTTGTGACCAACAGCAGCAGCAGCAAGAGCAGCTGCAGCAGCAGTGTCAATCATCTGACCAGATGAATCTATCTACAAGATCTGTGAATGTCATCGAAGACTCCTTACCAGGTCCCTTGAGCCTAGATGTTGAGGTGACACAGGAAAACAATGGTCAGTTTGAAAGACCTTGCCTGAAGCAGACAGATGGCAATCAAACAGTCGGTTGTGATGATGGAGCAGCCGCTGACAGCCAGTCGCGTGATTCACCCGCGAGAACCCCGTTCCCACCGACACCCCCTACGCCGGCTACGTTGCAGTTGCTAAAGCAGCAAGTCAGCAGCAGATCCAAGAAGACGCACACTGCCAGCCCGACCAGCTTCCTCAATAAATACAAAACATTGGCTAAATTGCCAGATGACAAAGGTGGCATCAGGCGGCCTAACAAACTAAAGCGGAAGCTGGACATGGACCTGGCCGGTGTCAAGGACCCCGTGGTGAAGGTGGTGAAGAAGACCAGAGCCTTGACGTCGGGGGTGGTGTCGGAGGGGGCGCTGTCCCCGGCCGTGGTGCGTGTGAAGGCCGGGGCAGGAGGGAATAAAGGCGCTGTCGGTTCACCCGTGGCTGGACCACGCCACCATCACACCTCCCCACTCCAGGTGACCGTGTCCCCGGCCGTCTCTTCCAATGGCAGCTTCATGTCGACTGAGGTCGAGCTGCCCACACGGCCGAGGTGGTGCTTTGTGGTCTCCAGCGTCAAGAAGCTGAGGATGAAGTTACGCATTGAGAGGTTCCGCGCATTGATCAATGCCCGTGAAAGTCATCGTCTCACGCAGAGTGTTACCCACCTCATCGTGTCTCCCGCTGATGAAGCCAAGGACCATCTCATTTGCCATCGGACACTCAAGTACTTCCAGGCAATTGCGATGGGGAAGTGGATCGTTAGTGTTCGGTGGGTGTCCGACTCGCTTGCCATGGGCCAGCTCCTGCCAGAGGCTGACTATGAGATCCATGGTGACACCTCCGACGACCTGGTGCACCCCGTTCATCACGGGCCGCGACGCGCGCGGCTCAACAGCGGCACGCTGCTCCGGGACTACGAGGTGCACTGCATGGGCGCCTTCACAAACCTCTCTTCCGATGACCTGCGTGACCTGATCGAGTTGTGTGGAGGTCACACTGTGCAAGAACCAACCCTCTTCTCCTTTGACCGCCATCAAAAACAGCTCATCATCGTTGAGCCCTCTTCCACTCCCAATCTCACAGTTCTTAAGAAATTGTACCAGCAATATGGGGTGCCCATACTTGGGAAGGACTGGATACTAGACTCGATCGGACAATACAAGCTGCAGCGATATAGTGAATACATGATCAGCCTGAACCCAGACTCGCAGATGTCTTGTTGA

Transcript

Blon|HiC_11G000372

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF16589	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357	Domain	BRCT domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR031099	Family	BRCA1-associated	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13763	BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0031436	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0035066	Biological Process	obsolete positive regulation of histone acetylation	Interproscan
GO:0035067	Biological Process	obsolete negative regulation of histone acetylation	Interproscan
GO:0045717	Biological Process	negative regulation of fatty acid biosynthetic process	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0070531	Cellular Component	BRCA1-A complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-