Detailed information of Blon|HiC_11G000364 in Branchipolynoe longqiensis Gene info
Gene IDAnnotationChromosomeStartEndStrand
Blon|HiC_11G000364TRANSLATION ELONGATION FACTOR-RELATEDHiC_scaffold_113625582136279336-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00009GTP_EFTUElongation factor Tu GTP binding domainDomainInterproscan
PF00679EFG_CElongation factor G C-terminusDomainInterproscan
PF03144GTP_EFTU_D2Elongation factor Tu domain 2DomainInterproscan
PF03764EFG_IVElongation factor G, domain IVDomainInterproscan
PF16004EFTUD2116 kDa U5 small nuclear ribonucleoprotein component N-terminusFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000640DomainElongation factor EFG, domain V-likeInterproscan
IPR000795DomainTranslational (tr)-type GTP-binding domainInterproscan
IPR004161DomainTranslation elongation factor EFTu-like, domain 2Interproscan
IPR005517DomainTranslation elongation factor EFG/EF2, domain IVInterproscan
IPR009000Homologous_superfamilyTranslation protein, beta-barrel domain superfamilyInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR031950Domain116kDa U5 small nuclear ribonucleoprotein component, N-terminalInterproscan
IPR035647Homologous_superfamilyEF-G domain III/V-likeInterproscan
IPR035655Domain116kDa U5 small nuclear ribonucleoprotein component, C-terminalInterproscan
IPR044121DomainSnu114, GTP-binding domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR42908TRANSLATION ELONGATION FACTOR-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071007Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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