Gene detail

Detailed information of Blon|HiC_11G000092 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_11G000092	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	HiC_scaffold_11	8428388	8455505	-

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_11G000092

ATGTACGTAGACCATGGCACCACGTTCTACCAAGAGGGGCCGCAGTGGCAAGGTCAGTACCACGGCCAATACCAAGGACAAGGTCAGTACCAAGGTCAAGGTCAGTATCAGAGCCAGTTTCAAGGTCAGTCTTCGCGAACCCCTAGTGGACAGCGCCATGGGAACTCTGGAGGACCTCGGGGAAGGGGCAGGGGCAGGGGTCGGGGGCAGCACCAATATCAGCAGCAGCACCAATATCAGCAACAGCAGCAGCAATGTCAGCAACAGCAGCATCCAAATCGAAATCAGATGCGAAGCAAATATAAGGAGTTCCAACAACGCGCCCACCATGAACAACAGGACAAGAGCGGGGCCCGGGGTGCCCCCACCCAGCCCCGGTCAGGGAGAGGGGGGCGCGGAGCCGGACGCCAGTACGGCCAAGGGGCGGGGCGTGGTGGCGGGGGGCGGGGTGGAGGGCGCAGGGGCGGGCGGGGTGGGCTGCTCTACCTGAGGAATGACTACCAGAAGAACCACATGAACCAGAACAATGGCGTCGAGAGGGGGAGCAACCATAATAATAACCGGAAGTGGGACATGTGCGCCGACGACGACGACACCGGAAGTGCGGCGGGTCCTTGTGGTGGTGAGGGTGAGGTGGACGAGGCCGAAGGCAGACGGAGGCAGATCAAGTTCCGCGAGCTGCACATTGGCACCAAGCTGCCTGGTGGTCTGGCCAAGGCGCCCCCTCGTGGCAAGATGCGCAGCTCGAAGCGACTGAACCTGGCCGAGACTGACCTAGAGACGCAGCGAGGTGCGCTCATCGAACAGCTTTCGATGGCTGACTACGAGTGCATGGTGTGCTGTGAGACGGTGCAACAAGATGCCGCAGTGTGGAGTTGTGCTAACTGCCACCACGTATTCCATCTCCGTTGTGTCAAGCGATGGGCCCGCTCACCAGCTGCGTCAGTCGAAGGTGACACCGGTGGTGGTTGGCGTTGTCCTGCGTGCCAGAACACTTCACAAAAGTTCCCTCACCATTACACCTGCTTTTGCGGCAAGGTGCGCGACCCAGAGTGGAACCGGTTCGACACTCCACACAGCTGTGGGGAGGTGTGTAAGAACCAGAGGAACACTGAGTGTATCCACCCATGCACCATACTTTGCCATCCTGGTCCATGCCCGCCTTGCTACGCGTCTGTCACGAAGGCCTGCTTCTGTGGGAAGACAAAGCAAATTGTGAAGTGTGGTCAGGCGCCACCAAAGTGCGTCGAGGTGTGTCAGAAACAGCTCAACTGTGGCAAGCACGAGTGTATATCCGTGTGCCACACAGGTGCTTGCGAACCCTGTGATATCGTGATAGCCCAAGCCTGCTATTGCGACAAGGCGAAGCGAAAAGTGGTCTGTGGGACTGCCGAGTCCTTCTCGCATCTCTTCTCCTGCGAAGCCGTATGCGCACGCACCTTGGAGTGTGGCCACCACACGTGTGACTGCCCCTGCCATCCAGGCGTCTGCGAGCCATGCGCACTTCAGCCGGAAGTGGTGACACATTGCGCGTGCGGGAAGACCCTGTTGGAGGAGCTCGGGGACGCAGGGCAGCGAGAGTCCTGCCTGGACCCGATACCGACATGCAAAGGAATCTGTGATAAAATACTCAAGTGTGGACCCAAGGCTCATCCGCACTCCTGTCAACGCGCCTGCCACTCCGGCCTGTGCGCACCCTGCGAGGACGGCCTCACTCCAGTTGTGTGTCGCTGTGCGATACTTGCGAAGGACTTCACCTGTGTGGAGGCGGTCGCCTTCAGTCACGACAAGCCCTTCCTGTGTGACAAGCGCTGTAACCGGAAGCGCACATGTGGTCGCCACCGCTGCCCGAATGTGTGCTGCATTGAGGAGGAACACCCGTGCAGCCAGACATGTGGCAGGAAACTGTCGTGTGGACTTCACCGCTGTGAGGAGCCCTGTCACCGGGGAAACTGTCCAACTTGCTGGCAAGTCAGCTTCGACGAGCTGGACTGTCACTGCGGTGCAGAGGTCATGTATCCGCCCATTCCGTGTGGTACGAAGCCCCCGTTGTGTAACCAGATTTGTCGCCGCCAGCACAGGTGCGACCACACCGTGCGCCACCCGTGCCACAGTGACACGGAGTGTCCACCCTGCACTGAGCTGACGGAGCTCTGGTGCATGGGGCACCACGAGCTGCGACGGAACATTGCCTGCCACCTGACGGACATCAGCTGTGGCTTGCCCTGTGGCGGGCAGCTGCAGTGCGCGCTGCACACCTGTAAGCTCATCTGCCACAAGGGCAAGTGTGAGCCTGGAACTCTGCAGTGCCAGCAGCCATGCAGCCGGCTGCGAGCGGAGTGCGGTCACCAGTGTGGAGCTCCCTGCCACGGCGAAACTCCCTGCCCCCGGGAACCCTGTAAGGCACCGATTGTGATCAAGTGTAAGTGCGGTAACCGCAGTGAGCGTGGCCTTTGTCTGCTGGGAGGAAACAATGACACGCATGAATACCAGAAGATGGCGACGATGATGATGGCGATGCGGATGGCGGATGTGGCTGCGGGGCAGGCTATCGACATTACGAGCCTCACAACGACAGCGGACGGAGGCAAGAAGAAGGTTCGACAGCTGGAGTGCAGCAAAGACTGCGCTATCCTGGAGCGGAACAAGCGACTGGCGCTCGCACTGGAGATTAAAAACCCGGACCTGCAAGGCAAGCTCGGAAACCCCAGCTACTCTGTGTTCCTGCGTGACTTCGCTAAGCAGAACATGAACTTTGTTATAGGGATCGAGAAGCAGCTGTCGGAGCTGGTGCTTTCTGCCCAGAAGTCGAAGCAGCTTCGCCGGTCGCATGCATTTCCTCCAATGAACAATGCACAGCGTCGCATGATCCATGAGCTAGCCGAGGCCTATGGGTGTGAGACGCAAAGCTACGACGTGGAACCCAAGAGGAATGTCGTAACCACCGCTTGCAAAAACCGATGCTGGCAACCGACTGTCACCCTGGCTGCGGCGGCGACACGTGAGATTTACCCGAAAGCCCCTGTGCCAATGCCACATGGAAGTACTGACAAAGAGCCAGTAAGCGAGATCAAAAGCAAGAGCACCAGGGTGAAAATGGCGCCGTGGGGCAAGAGCGCAGCCGCCGCCAAGCCAGCGGCCGAGACGCCGGAACCAGCGTCCCCGGCGCCCGTGACGTCATGGGCGTCTCAGGTGCGGCGCAACACGCCCTCTGGTAGCGAGCCGGAGAAGCAGCGCAAGGCGGACATCGACTATTTCGACATGTCGTGA

Transcript

Blon|HiC_11G000092

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-NF-X1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01422	zf-NF-X1	NF-X1 type zinc finger	Family	Interproscan
PF01424	R3H	R3H domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000967	Domain	Zinc finger, NF-X1-type	Interproscan
IPR001374	Domain	R3H domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR034078	Family	Transcription factor NFX1 family	Interproscan
IPR036867	Homologous_superfamily	R3H domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12360	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-