Gene detail

Detailed information of Blon|HiC_10G000801 in Branchipolynoe longqiensis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Blon\|HiC_10G000801	FACT COMPLEX SUBUNIT SSRP1	HiC_scaffold_10	64758408	64783324	+

Gene Structure

More details in Jbrowse Sequence

CDS

Blon|HiC_10G000801

ATGGGGGACGTGATAGAATATTCAGATATTCACCAAGAAATTCGAGGATGTATGAATCCGGGGAGGTTGAAACTGCAGAGCGGCAGCATAATTTTCAAAAACATAAAAACCGGAAAGGTGGACCAACTGAACGCCAGCGACGTGGAGTCTGCACAGTGGTTGACCCGGGCTCGAGGCTATTGTCTGAAGGTCATACTCACCAACGAGACTATCCACCGGTTCGACGGGCTGAAAGAGGCGGAATATGACCGTCTTGCACCATTCTTCGAGAAGCACTACGACACCAAGCTCGAACAGGTGAATATGTCCCTGAAGGGATGGAATTGGGGTCTCTCTCGCTTCACTGCCAACGCGCTTGACTTCGAGGTCGATGGCAAGACAGCCTTCGAGATCCCGCTGGGCAACGTCTCACACAGCCTGACGAGTAAAAACGAAGTGACGGTGGAATTCCACCCCAACGACGACGCCCCAGTGTCGCTGATGGAACTTCGGTTTCACATTCCGGCCGGGGCTGCAGACAACGAGCAGGATCCCGTCCAGGACTTCTACCACAACGTCATCGCCAAGGCGGACATCATCCAAGCCACTGGCGACGCCATTGTCATCTTACAGGAGATCCAGTGCCTCACGCCAAGAGGGCGCTATGACATCAAAATCTACCAGACGTTCATCCAGCTGCATGGCAAGACGTTCGACTACAAAATCCCGCACACGACCATTCTCCGCCTCTTCCTGCTTCCACATCGCGACGGGCGGCAGATGTTCTTTGTGATCTCACTAGACCCTCCGATCAAACAAGGAATGACCCGCTACCCGTTCCTCATCTTGCTCTTTAACATAGAGGATGAGATCACCCTCTCACTGGGCCTGACAGATGAGGAGATCACTGAGAAGTACGAAAAGAAGATTGAGAAGGAGATGGAAGGCTTGGAGTATGAGGTTGTCTCCCGTATAATGAAGACAATCGTCAGCAGAAAAATCACAACCACCGGCTCCTTCAAGGGCGCGTCGGGCATACCCTCTATTGCCTGCTCGTACAAGGCAGCTACCGGCTTCCTGTATCCATTGGATCGTGGGTTCATTTTCATCTACAAACCAGCCATGCACATCCGCTTCGATGAGATCTCGTCGGTGAACTTCGCGCGCGGCTCGGGGTCCACCACGCGGTCATTCGACTTTGAAATTGAGACAAAGGCCAATACCACCTTCATCTTTGTCGGAATTGAAAAGGACGAATACGGCAGGCTGTATGACCATGTGATGCAAAAGAAGCTGCGAGTGAAGAATATTGGCGGAAAGGGTATGAAGAAGGGTCTGTACAACGAGGACATGGACGGCTCGGACAATGAGGGCAACGTGCTGGACCCGTACCTGGAGCGCATGAAGGCGGAAGGAAAGGACCGCAACGAGGACGACCTGGACGACGACACGGACAGCTCCGATGAGTCATTCAACCCGGGTGAGAGCGGCAGTGAGGTTGCTGAGGAGTACGACACAGACGCTGGGTCAAGTTCTTCGAGTAGCGAGGAGGACAGTAATGAAGACGAAGAGGCGCGCAAACAGCGAAAGGACGCTCGACGAGCAGAGAAGGAGGCTGAGAAGGCCAAGGTCGTGAAAGAGCGGAAACCCCGAGGCCCAAATAAGAAGCGCACAAAGAAAAACAAAGACCCGAACAAACCAACCCGGCCAACGACAGCATTCATGTCATGGCTGAACGACACTCGGGAAGAGATGAAGTCCAAGTTCCCTGGGATCAGTGTTACCGAAATCGCCAAGAAGGGCGGAGAAATGTGGCGCGAGCTCAAGGACAAGACGAAATGGGAGGAGAAGGCGAATGAGGCCCGTGAGCGATATAAGGTGGCCATGGAGGAATACAATGCTCGTCCACATGATGAGGACGATGAAGAAGAAGATGAGGACTCAAAAGCAAGTCCTAAGGGCCGGAAAAAGAAGTCAGGTGGCAGCCCGCGCAAAGCCAAGGCGCCCGTGGGTGACACGAAGGGCGGCTCAGGGGCGGGCTACAAGAGCAAGGAGTTCATTGAGAGCTCGGGGTCCGAGAACGACAGCGAAGCCAGTGGCAAGCCGAAGAAGAAGAAAATGAAGACGGAGCCGAGGGCGGAGTCCAAGTCTGACGGCTCTGACGACTCGGAAGACGACGAGTACCAGGGTGGATCAGGGTCCGAGTCGGGGTCCGACGGGGAAAAGAAGCCGAAGGGCCGGCGGACATCGAAGCGGGGCAAGCCAGGCGGCGAGATTAAGGAGGAGGCAGAGGAGTTTGCTGGGTTGCCCTCTGACGAGGAAATATTAGCTTCCGGTTCCGGGTCAGACGAAGGACCGCCCTCACCACCTGGAAGTGGGTCGGCGAAGTCTGGCGAATCGGACGTGGACAACTAA

Transcript

Blon|HiC_10G000801

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF03531	SSrecog	Structure-specific recognition protein (SSRP1)	Domain	Interproscan
PF08512	Rttp106-like_middle	Histone chaperone Rttp106-like, middle domain	Domain	Interproscan
PF17292	POB3_N	POB3-like N-terminal PH domain	Domain	Interproscan
PF21103	PH1_SSRP1-like	SSRP1 PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000969	Family	FACT complex subunit SSRP1/POB3	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013719	Domain	Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain	Interproscan
IPR024954	Domain	SSRP1, dimerization domain	Interproscan
IPR035417	Domain	FACT complex subunit SSRP1/POB3, N-terminal PH domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR038167	Homologous_superfamily	SSRP1 domain superfamily	Interproscan
IPR048993	Domain	FACT complex subunit SSRP1-like, first PH domain	Interproscan
IPR050454	Family	RTT106/SSRP1 Histone Chaperone/FACT Complex	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45849	FACT COMPLEX SUBUNIT SSRP1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0035101	Cellular Component	FACT complex	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:1902275	Biological Process	regulation of chromatin organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-