Gene detail

Detailed information of Ama675_5db7b01a in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama675_5db7b01a	CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR	chr2	56980511	57016140	+

Gene Structure

More details in Jbrowse Sequence

CDS

Ama675_5db7b01a

ATGCAAATGATGTCCGTCGATGATCTTGTGGTGTCGTCACATTCAGATCCCATACAGAATGTCCTCGCAATATCTCCATCCAATATTCTCACCATCTCACCCACCAGTAATGACGACCTTGACATCAAGCATGAGGATGATGAGGGAATTGCTGTATCACCCGCATCTTTACTGGCCGGTCAGGGATACCTAGTGTCACCTAGCATGAACAATCCCACACTACAGAGTCTGCTTACCTCACCATCAGCATTGCAGGTGCCTCAGTTGGGGCTGCCTGAGGGGATTCAGATCATCACAGTGTCCAGCCCATCCAGCCTGCTCCCCACACAGACGGACGGTCTGGGTCGTATATGGCATGTCATCAACCCAGATGATACAATTATCGCTGTGGGCAATGAAGAATTGAAGCATCTGGCTTTAGCTACTGGAGAGACTATGGAGGATGTTGACCAAGTAACGTCTACTACAACTTCTGCGGATGCTCTCGATGTGCATGCAGAGCTAGCCAGCGTTCTCATGCCTCCGCCCCAGCAGCCCCTCCCTCCGGGCTGTCCCGGCTGGGCGGCGAGGTTGAACAACTGTGAGAAAATTGGAGACTATTTCCGTGGATATGTAGACACGGAGGTGGAGCTAGATATAATTCTGACCTATCACAAGCAAGCTACCCAGAGTTTCTGGGGCACCAGGCAATCGCCCAGTCCTGCTAAGCAATCGACCAGGTTCATGTGGAAATCTCAATATGTACCTTATGATGGTATTCCATTTGTAAACACTGGTAGTAGGGCAGTGGTGATGGAGTGTCAGTATGGGCCTAGGAGAAAGGGCAGTCTGGCCAAGAAACAGATAGATACTGGCTCTGGTGGAGAGTACAGGCAAACATGTCCTGCTAGGATTTATATCAAGAAAGTTCGGAAGTTTCCCGAGTACAAGATAGACCCGGGCCTGGACAGGAAGGTGATGAAAGGTGCTATGGATAAAGCATTTCATGCTCTCAAACAACAGAATGTAGAGAAAATTGGACAGGATAGGTTCTATGTTCAGTTACCTCTTCCATCTGCCCACGAGTTTCATGATGATATGTCTGGCAGAGGCGGCAACGGAATCGCCATTCCCCAAATCTCAACCCACACCCAAACTCAGGAGTGTCAAACAGCGGAGGTAATCATTGAAGAGTCAGAAATGGAAGATAACTCTGACAAGAAACACAGATTACATCCCCTGGTTGTACAGAAGATAAGAGAGATTGTGGCGGGTGGAGAAATTAGAGTGTACTACGTAAGAAGGCTCCTCAGAATGTACGTGTGCCAAGAACTGTACAATACGCAGATGGAAATGCCATTTGTGTCATCGGTATCGCGGCACGATCTCTCCTTGTTTCCAACAGTAACCGATCTAAAAAACCACATACATCAAGCAGTGAAGGATATTGAAAATGGAACGCTTGCACTCACTGCTCCAACAGTGAATGTTGAGCCAATGACGACAGGGACTAGTACAGATGATATGATACACCTAGCTGATCTCACCCTATTGCCACAAAATACAGTAGTGCCAGGTGGGCCAGGACCTATACCTGAGACTGTCACTGTGACCTTGACCCAGAGTCCAGGTGAAGAGGGCGGTCATGTGATATCTCGTATCGAGACCCATATGAGTGATGGTACCACACAGATCAGTACATCTCTCACGCCCGAAACTGCCCAACTGTTGGCACGACTCAACCCAGCCATGTTCCCACCGGGAAGTCTTGTACAGTTGAAGGCGGAGAATGAATCTCAGTTAACAGTTCAGGCTGTGCCCAGTAATATGATCTTGAGCAGTTCATCTGCCCTTGACACAAATGTGTACACCACTATAAATGGTTCAGCTACCCTCGACACCAATACATACACCGGTATGGACCTGGAGGTTCACGGTCATGATGAATCTCTGGCTATGCAGGCAAGTGAAGACCATAACTCCATAACTATATCTACATTAGAGGGGACCCAAGTTCCTACTTCCATCATGACATCTGATAACGCTAGTCTTTCCGAACAGTCGGCTCAGCTGATAAATGTCAACATTGTAACAAGTGAAGATGATATGCAAACAGACAGCTGTGATGAAGACTTGTGA

Transcript

Ama675_5db7b01a

ATTGTGTTCAGTCCAGGACGAGGTTGGTGTTGATTTCGAGAAAGTTTGATGTTACATGCAAATGATGTCCGTCGATGATCTTGTGGTGTCGTCACATTCAGATCCCATACAGAATGTCCTCGCAATATCTCCATCCAATATTCTCACCATCTCACCCACCAGTAATGACGACCTTGACATCAAGCATGAGGATGATGAGGGAATTGCTGTATCACCCGCATCTTTACTGGCCGGTCAGGGATACCTAGTGTCACCTAGCATGAACAATCCCACACTACAGAGTCTGCTTACCTCACCATCAGCATTGCAGGTGCCTCAGTTGGGGCTGCCTGAGGGGATTCAGATCATCACAGTGTCCAGCCCATCCAGCCTGCTCCCCACACAGACGGACGGTCTGGGTCGTATATGGCATGTCATCAACCCAGATGATACAATTATCGCTGTGGGCAATGAAGAATTGAAGCATCTGGCTTTAGCTACTGGAGAGACTATGGAGGATGTTGACCAAGTAACGTCTACTACAACTTCTGCGGATGCTCTCGATGTGCATGCAGAGCTAGCCAGCGTTCTCATGCCTCCGCCCCAGCAGCCCCTCCCTCCGGGCTGTCCCGGCTGGGCGGCGAGGTTGAACAACTGTGAGAAAATTGGAGACTATTTCCGTGGATATGTAGACACGGAGGTGGAGCTAGATATAATTCTGACCTATCACAAGCAAGCTACCCAGAGTTTCTGGGGCACCAGGCAATCGCCCAGTCCTGCTAAGCAATCGACCAGGTTCATGTGGAAATCTCAATATGTACCTTATGATGGTATTCCATTTGTAAACACTGGTAGTAGGGCAGTGGTGATGGAGTGTCAGTATGGGCCTAGGAGAAAGGGCAGTCTGGCCAAGAAACAGATAGATACTGGCTCTGGTGGAGAGTACAGGCAAACATGTCCTGCTAGGATTTATATCAAGAAAGTTCGGAAGTTTCCCGAGTACAAGATAGACCCGGGCCTGGACAGGAAGGTGATGAAAGGTGCTATGGATAAAGCATTTCATGCTCTCAAACAACAGAATGTAGAGAAAATTGGACAGGATAGGTTCTATGTTCAGTTACCTCTTCCATCTGCCCACGAGTTTCATGATGATATGTCTGGCAGAGGCGGCAACGGAATCGCCATTCCCCAAATCTCAACCCACACCCAAACTCAGGAGTGTCAAACAGCGGAGGTAATCATTGAAGAGTCAGAAATGGAAGATAACTCTGACAAGAAACACAGATTACATCCCCTGGTTGTACAGAAGATAAGAGAGATTGTGGCGGGTGGAGAAATTAGAGTGTACTACGTAAGAAGGCTCCTCAGAATGTACGTGTGCCAAGAACTGTACAATACGCAGATGGAAATGCCATTTGTGTCATCGGTATCGCGGCACGATCTCTCCTTGTTTCCAACAGTAACCGATCTAAAAAACCACATACATCAAGCAGTGAAGGATATTGAAAATGGAACGCTTGCACTCACTGCTCCAACAGTGAATGTTGAGCCAATGACGACAGGGACTAGTACAGATGATATGATACACCTAGCTGATCTCACCCTATTGCCACAAAATACAGTAGTGCCAGGTGGGCCAGGACCTATACCTGAGACTGTCACTGTGACCTTGACCCAGAGTCCAGGTGAAGAGGGCGGTCATGTGATATCTCGTATCGAGACCCATATGAGTGATGGTACCACACAGATCAGTACATCTCTCACGCCCGAAACTGCCCAACTGTTGGCACGACTCAACCCAGCCATGTTCCCACCGGGAAGTCTTGTACAGTTGAAGGCGGAGAATGAATCTCAGTTAACAGTTCAGGCTGTGCCCAGTAATATGATCTTGAGCAGTTCATCTGCCCTTGACACAAATGTGTACACCACTATAAATGGTTCAGCTACCCTCGACACCAATACATACACCGGTATGGACCTGGAGGTTCACGGTCATGATGAATCTCTGGCTATGCAGGCAAGTGAAGACCATAACTCCATAACTATATCTACATTAGAGGGGACCCAAGTTCCTACTTCCATCATGACATCTGATAACGCTAGTCTTTCCGAACAGTCGGCTCAGCTGATAAATGTCAACATTGTAACAAGTGAAGATGATATGCAAACAGACAGCTGTGATGAAGACTTGTGACCTTGACCTACTGACCTTACTGGTCAGCAATCCTAACGTTGTAACATCATCGCTTGTTTAGTATATCCGCAAACAATGCTCAGGAGTATTAATATATCCACATGGAATCCTGGGACCTATGATCCGGTTCAGTGTATTAATATATCCGCATGGAATCCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15299	ALS2CR8	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029309	Family	Calcium-responsive transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14694	CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-