Gene detail

Detailed information of Ama38365 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama38365	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	chr3	43452828	43537617	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Ama38365

TATTAACGCAACGGTGGCGTAAGCTGTAGTTTATATATAAAACCCCCAACACTAATCCGCTAAATTCAAAAGATTTCAATTTAATTCTACGTGCGTTATTCAAATATTGACCTGTCATGTTGTATACAGTGTATTCACTTTTCAATTCGCGTGAAAGAAAGACACACAATTATATTCTCTCGGCCTGAGAAAAAAGAGAGAAAAAAACGGACATACGGCAAAAGCTCTGAGAAACATATGGGCGGTGCTACATAATCGATGAACCAATGAGTGAAGCGATTTTATTAATTCATGGCATATGTCAATGGATAACGTGTGCTAATTTGAATAACAAAATGAATGTATAGCAGCTATCGAGTAGATCGTGTATAGCCGGGAAATTGTTCAGTTCTCTATAACAGAATGGGACACATAAAGACCTTGTGAACGCTTGTTTCTTGATCAGATACAACCCAACGTCTTTCAAACGCACGCGCACACACGCACGGACGGATACACTAAATAGAAAATATTATTATACTTTTACAATTGCACGTGTATTTTACCGACACTTGTGGATTTTATTCGCGTTGATATTATTAGAAATAGATAGGATATCTATGCTATAGCTGGGACATCTGAAGTGTATCAATATAAAATTACGTTACAGTTGAACAACTGAATATTTTCTCATATTTCCTGAGATAAACAAGGAATTGAAATCTATTTAGTGAAATAAACATCGATTTGTGTCAATTTACTCACATACAGGAGTATTTGCGAGTAAAAACATCCGGCACTTTTGACAGTTTGAATAGACAGGTATTTGTGCCTATCACGTGTACATGTAAGTTTCATTTAGAGTGAAGGAATCGTTCTGTACATTTTACGCACGTGAGCCGATGGTTCAGGTAGATTAAATTTATCAGACGACTTATCTGATTATTTTCATATATATAAACTACGAGGGAGGATTTATGCAGCTAACTGTGTATTGCTTTTGAAATCATATCTAAGGCTTTTAGAAGGCGACTTTTCGAGTGTGAATGCTTGATAATTTCTCGTCTAGCAAAAAACTATTCCAGGAAAGTAGTTATTATTGTTTGATCTGTTTCCTCGTAATTCTTTTGTAAAAGATCATTTTAGGACTGCTTTTGTTTCTGGGGAATAATTTCGGTTTATCTTGTATCGCATGCGAGGAAGGAAGGAACGTTTCATCGATTTTCCTTGTACGTTTATCCCCCATCAAAGTGCAATTTGGAAACTCATAGATTCCTATCGATAGACCATATAGCAAGTTTATAAAAAAACCTGAAATTGTTACTTATGAATACCACGGAACAATATAGTAATATAGACCCAATCATGTATAACGGTGACATGAAGACGTCTGGGAATAATGATGGTTCGAGCCTCAACTGCGATACTACGATAGCCCTTAGCCAGAGTATGGACTCCGTGAACACAACACCAGAGGATGAGGTGCGGACACTGTTTGTGAGTGGACTGCCAATGGATGCAAAACCCAGGGAGCTCTACCTACTCTTCAGATCATATAAGGGGTACGAAGGTTCACTATTAAAAGTTACAAATAAAAACGGCAAAAATACATCGCCTGTTGGATTTGTAACATTCAGCTCAAGAGTTGCGGCTGAGGCAGCCAAGCAAGATTTACAGGGTGTACGTTTTGACCCCGATCTACCACAGACGTTGAGATTAGAGTTTGCTAAGAGTAACACGAAGGTGACGAAACCCAAGCAACAGAGTCCGCAGCCGGCAACACATCCAACGTTGATACATCCGCTCACTGGCCAAATGGTGCCCATGCCCATGATGTCACCTGGGGCATATCCAGGGTACCAAATTTCTACAAATTCTTCTACTGATAAATTCAACCATTTTCCAGAGGATTTGGGGGCGGCCTTTTTTCCAGCAGCAGGACCTGAAGCCTGGGCACCACCCCACGCCCTTGCATACCCGGAACTTGCCCCCACTGCTCTCCACCACACTGCCGCACTTATGCAGCACCCAGCTCTTACACAGCTCCCCATACGGGCTGTTGATATGAACGCACTAGCCCTTCAAGCTGGTAGCCCACTAGGTTACGAGTTCCACCCCGCCATGATGCATGGAGCCGGTTCAATCGCAGCCGCCATGCCACACCCCTCGCTGGGAGCCACACCTATCTTCACTAGCCCACTTGGTGGATTGCCGCAGATGCAGGTTGCTATGGGAAAGGCGGTGAATGGAGCAGCCTCGAGCCCCGGCCTCCCCGGTACAACCACTAACTCACCATGTTCTACTCTATTTGTTGCAAACCTAGGGCAGTTCTCTTCAGAACAAGAACTGAAAGATTTATTCAGCAGTTTTCACGGATTCTCGAGATTAAAAATGTACAATAAAGGGGGTACGCCAGTATGTTTTGTAGAATATCAGGAATTAAAGCATGCATCTGAGGCTATGAATAGACTGCAGGGCTTTGTGTTGCTATCCTCTGACCGTGGAGGAATACGCATAGAATACGCAAAGCATAAAATGGGAGAAGTAGTCACTGCATAAACAAGAGCCGTTGGCAAAGAGAGATGAGATGATGAGTCCGGCTCAATCACCTCCATTGTCTGTGATGACATCATAGTGACCACGCGATCGTCATGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034788	Domain	Protein couch potato, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-