Gene detail

Detailed information of Ama35136 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama35136	NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B	chr16	37250090	37260023	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Ama35136

CCGATTTGTAACGGATATTCTGATTGGTTAAAACAATCTGAAGAAAGGTCACATATTTTGTACATTTCATAAGCATTAACAGACGATATAGTAGTGAACAGAAGATAACGTATGTGTTAATTCTAAATGAAAATACATTGTGTACCAATAAATTAGTAATAATTGGATTTTTTTACATTGGATATAATAACAGATAAAGAAAAGATTCGGACGAACTGCGTAACTATAGTAACAACACATAGTTGGCTTATATAGTGAGATTGAACCCTGTATTCAAGGTGTAATAATGGCACCTACACATAACTTGAATTCCGCTGTAGACGGAATGCACCACCATGTGCAAATGCATCACAGTAACTGCGTGAAAACGGTAGATAGTGTCAAAAGTGCGCGCACCCTGCAAAGCGTATTACGCGGTGAAGTTCCATCAGCCTATATACATTTGACGTCTTCATATAGAACTGCTATGCATGATCAAAGAAGTCCGCACATGAACTCCGAAAGCGAACCAACTGTCCCGTTTAAACATGTGCATAGGGAACACGAAAACTCATTCCGACCATATCAGGCTAACTCACCTCAGCGTACCGTGTGCCACGCGGAGGCAACCATTCAGTCTCGCGTGATCACGAGATCACCAAAGCGTACTCACTCACCGTTCATGGACAGACATTCTATATACGGAAATGCAAATTATTATACGGAGGCCTCACAATACATGGGACAGTTATATGATCGAGCCTCCCCGGCCTACGAAGATCGATCGTCCCCATTCCAAGATTCTGGTTCCCCTTTCATTGGATCACCAAATTACAGCATTGGTTCCCCAAGTAGTACTTATTCACACTATCAAACTACAGGATCACCGTATTCAGTGCATCAGAATAACGCGCCATTGTACTCGCCGTCCCGTACCGATAGTCCGTACTCGCCACAAGGCAGCGTTAGCTCGCCTGACACTACTCACGAAAACATCAACTCGCCATACTCAGGATATTATCAGACCGATGGAGCTCGTCGGGATTCGGAAGGATACTCGAGTGAAAGCCACGAACTGGCTGACGATCAGCCGATAGACTTGTCGTGTAAAACTGAACTCAAGCACACATGTGACACTTTTACATCCGACGACAGTGATTTTCAAGACAATCTGTCCAATGGTTCGATGTTACGTACTTTGCTCATGCCAGGCAAACAAGTAAGCACCGATTATGGTTCAGACAGTGGTCGCGATTCACCTGGATCTGATGTGTACCGACCGGAAATACCTGTTACAGGCTCCACGCGCGTGACGCTTGCGAAAAAGATGGTATACCCCATCACTTCACGCGTGTCTGATTGGCTTGTCAAAATAGTGCAATTTTCAAAATCTATTCCGGAGTTTCAATCAATGTCTCAAAACGATAAATTGACTTTGCTCCTACATTCATGGACTCGTATGTTGCTCCTGCTCATGTCGGAAAATGACCACGAATTTGCGGTTACGCCGCTGCACCTTGACGACAAAAAAGCTCATGACGTCACACCATCGCAGGAAGAGCCAACGATGAAATCGGCGGAGTGCATTCAAGGTTTCATAAGAAAATGCAAGAATATGGACATGGACCAGAAGGAGTATGCTTTAATGAGAATGGCCGTTCTATTTAATTCAGGGAATGTCGGTTTAGATGATGGAGAACTCGTGGAAAAACTCAATTCCGCCGTTCAACAGTTGCTACAACAACACGTGACCTCCACGCGCCCCGATGACGTCATGCACTACTCAAAAATCCTCATGCTTCTACCATCTTTGTACGGTATTAACTGCCGGATGGTCGAAAATCTCTTCTGCACACGAATTAATACAGACGTACACGTTTTATTGAAAGAAATGTTACAGAACTTGTAGTAACAGTGAAGTTAAATGTGTTCCAATAAACGTGACAATAGATCACAAGTGCGCAAGCTCAGACATTCCCGGCATTCCTGAAACATGGATCCATAATAATTACATTCAGCGGATGACGTTAGCCAATTCATTGTGCATGTAGGGTTTACCATCGTCAAGACTATCGATTTGGGACATTTCTTGTTGTATTAATATTGACCAACTTGCAGTATTGATAACTCGTTAAAGCTAGATATTTGGGAAATGTTTAGGCAGGCAGTATTTCAAGATTTAAATGGTGATTTTTTTTTCCTATTCTAACATTTAATGTAATCATTTAAAAATGTTCTCCATGGCGGGATATTGGTTAGATTCCTGATGTATGTTTCTTGATTTATAACATATCACTACATATCCTAGATTCAAATGGCATTTCAAGTTATGTTTGAAGAATTTAGTTTATACACATTTATTTTAGCTCGATTGCGAAACAAGTTAACAACTTATATTAATATCTCTCGATACCTCATTCCTGG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ESR-like
Transcription Factors Family	Miscellaneous
Transcription Factors Family	Miscellaneous
Transcription Factors Family	RXR-like
Transcription Factors Family	SF-like
Transcription Factors Family	THR-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR033544	Family	Nuclear receptor subfamily 0 group B member 1/2	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24081	NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0043433	Biological Process	negative regulation of DNA-binding transcription factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-