Gene detail

Detailed information of Ama30364 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama30364	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION	chr15	27432356	27460717	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Ama30364

ACATTCTCACAGAGGAAAATATCACGCACCTAAAAAATAGACTATTTGGGGTGGAGAATCAACCAGACGATGCACCGGTAACTCTCGCACAGTTTTGCTGGCATCCTATGGTAGATGTGAACTTCTCCTTTTGGAAATGGGTTTTGGGAATCTACAATTTAGTGAAAGAGTCCTTAAAACCATATTGGGCAGACGGACTGATTATGGGTTTTGTGAAGAAAGAGAATGCGGTGCAGATGTTAGAAAAATGCACAAAACCAGGAACGTTTATCCTACGATTCTCGGACAAACACATTGTAAAAAGTGATGGGCTCACATCCATATATGGTCATCTTACGGCAGGTGTACTTTTACTGAAAGAAAAAAAAGATGATAAACGAAACAGTTTGGGCCAGTCAGGAAAGGTGAAGGTAATAGAGCACATTGATGTGGCAGATTTCAAGAAGCTACGCAGCAACACCCTTGCCGACATCCTGAAGGAGACCTCGATTAAAGTACGAGATGGTACTTCTGGGCTAACAATGTACAAGCATCTGTATCCTGGATACAAAAGGAGGGAAGATCTGTTTGATAAATATTGCCAAGAAGGTTCAAGCGTGATGAGTGGATACAAACGTCCGAAAGAGGCATATGTTGCCTACCTCGAACAGGCTTTGGCGAAAATGCATTGTGATGACCAAGTAGCAAGTTCTCGAATATCAGCAGATGCTGACTCCAGCTCTCAGTCAGCCAGTGCAAAGAAATGCAGACGTAGTACAGAACTGCAAGGAGACTGGACCGAGGGATCTACCATTTTATCTCTGCAAGGAAGTTACCCAATGACCCATAGCCAGAAATCTTATGATGGACAGAGCCCAGTTCCCACATTAATGAGCCCAACTTCGTCAGTCCAGAGTCCAATGCAGTCAGTGCCCAGTCCAACTATGCAGTTACCATCGCAACAGAGCCAGGACTGCAGGGTTCCAATTTCAACAAACATGTCCTCCTTTCTTCCAAGTTTTATTGAAATTGGTGGTATGGATACCACTTTGGGAGATATATTTATCTGTAATGATAGGCATTTAGTAGATGAATCATTTGCTTCAGAGTCAACAATGCCTGGTTTCACTGAATGTGGAATGCCTGTTGAATGTGGAATGCCTGTTGGATTGGCTGATATGTCTCAGCAAGTTGGTCAGAAAGTGATACAGAATACACCAAGCGGTGTCTTTGCTGATATTGTGGATGAAACGATGATACAGAATACAGGAAACGATGCTGTTACAGATGTTCGCGAAGACGGTATCTCAGACATAGATACTATTCTGTACAGCGATTATGTCCCTGTTTCTACCTCATCTGACAACTCGGAGGAAGTCCTCGGATATAATGGCCAGGAGATAGCAACAATCACAGCCAATGGCAGTGCGGGTATTGATCCATTATTCCTGTTGAGTTCTGCTGACACCATGGACATAGATGGAGAATATTAATAGGATGTGTGCTACTATAAATAAACTGACAACTTATAAAGTGAATTATTCCCCCAGATCAGTTCAATTGCGTTCAGGTCCGCGTGGTATGGCGGCAACCTTGTCGCCTGGTGACCATGTTACTGTAGCAGGTGTCGATTACATATGCAGGTTGTGTCTTGTGTAGCTTACACAGCGCATACAGCTCTGGTCGTAGCATGTTCGGTCCATACGCAATTCCGTGCCTGGTCAACCAGCTCTTGAGGTCGTCCTTCTTGGTGGCGGTAGTTGGACACCGATCCACCTGCACGTTGTGATACGCAGCGTTATCTAGCACGACCACAGAATTAGGTGGTAGGTTGGGATGAGCTTCTCGTTCAACCACTTAGAAAAGTTGTGGAAGTTCATTTCAGAGTGGTAGTCGCCGGAAGCAGACTTTGCCTTGAAGACCAATTCAGCACCTGGAATGAACCCGTCTGACCCACCGGCATGAAGTACGATCATGCGTTCACCTGAAAGTATAAATAAATTACAGAAAACACATATCTATATACATGATGATTGTTTTCTGTTAATTCAACTTTATTCGTCAACTTACCTTTCGAAAATGGTATCTTCAGTCCAATCTTCTCATCTTGCCAACACTTCAGTACGACGTGATTACTGTGAATGTACATCTCGTAAGTGTACACAATGTAACGACCAGCTTCTCAGTGTTTCTTTATCTGTCGCACGTATGATATGCGGTGGTTCCATACATCCGTTCTCTCCATGAGGACCTTCCTGTTAGATTTGCAGCGGCTGTACGAGAATCCTAACTTCAAGACAGTCTTCCTGAGTGATTCCTTTGATCCTTTGTATGCAATATCCTCCTGTAAGGTCTTCCTGATGTTGTTTAGTGTAGGTAGAATCTTTCTGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR001217	Family	Transcription factor STAT	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11801	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006952	Biological Process	defense response	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007259	Biological Process	cell surface receptor signaling pathway via JAK-STAT	Interproscan
GO:0042127	Biological Process	regulation of cell population proliferation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-