Gene detail

Detailed information of Ama23186 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama23186	UBX DOMAIN CONTAINING PROTEIN	chr17	33006280	33026584	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Ama23186

CTGACAAAGCAAATGAAGGGTCGATGATAGACAATTTTATGAAAATTACTGGCGTTGATCATGATAGAGCAAGATTTTACTTAGAATCATCAGCCTGGAAACTTGAATTTGCGATGGCAAGTTTCTATGAGGGAGATCCAGATGATGACAACGATTTAGCAAGTGATTTCAGAGTTGCACAGCCTCCACCGGTAATGTTACCACCTGAACCCGAGACCAGCAGTCGTAAATCCAAGTCTTCTTCCACTGGAGCAACAAATTCAAGATTTGCAACTATCGGTAGCATGCATATGGCACAGGAGGGAAGCTCGAGTGATGAAGAAGGTCAAGCTTTCTATGCAGGGGGTTCAGAACGAAGTGGTCAGCAGATCTTAGGGCCTAAGAAGAAGAAAACAAATGTCGTTGGAGATTTATTCAAATCTGCCCGAGAGCATGGTGCTGAGGAAGTCGCACATGATGAATCTTCTGGGCTAACGAAACGTTCAGCATTCCAAGGTTCTGGTCACAGGCTCGGGGATGGGGAGGGACAGGATTCCGTAACAATCCCGGGAAAACCGGTGTCACATAATAAAAAACAGATAGACTGTGTATTGAAGTTATGGAATAATGGATTCAGTGTGGATGAAGGGCCACTGCGGGACTTCAAAGATCCGGCTAATAGAGATTTCCTCGCAGCTATTTCAAAAGGAGAGGTACCTCAAGAATTGATCCGGGATGCAAAAAGTGGAGAGGTTAATCTCAATATGGAGGACCACCGAGCAGAAGATTATGTCAAGCCTAAAGTTCCAGTCAAAGCTTTTACAGGGGAGGGAAATCTACTGGGCAGTCCGACACCACAGGTTGTAGGTCAGTCCTCTGCTACCAGCGCAGCACCAGGTTCAGGTCAGTCCGCTGTCACTGTGGATGAATCTCAACCATCGACTACGATACAGATCAGGCTTGCTGATGGCTCAAGACTGGTTTCAAAGTTCAACCATTCACACACAGTTGCAGATATTAGACGACACATAACATCATTGCGTCCTCAGTATGAAGATACCAGCTTTATCCTGCAGACTACATTTCCAAACCGAGAGCTTGCGAATGTCTCGGAGACGATAGAACAGGCAAAATTGCAAAATGCAGTCGTAGTTCAACGTTTAAAATGAAAACTTGTGTATAGGTATAACTGTGTATTTCTAGTAGAAGTGATTGATATAACTGTGTATTTGCACATTAGCATAGAACAAAAAACAGCTAACACAGACACTGTATGAAATACATTTTTGCAGTTCCGTACACTGCAGCTTGGGTTGTTTTTAAGATTGGTGCATCTTAATTACAATGACATTGAGCACAGACAAACACATTGGGAATGAAAACATACCAAAGATTGATGGCATGTCTACAATGCAGAATATCAGATGTGCAAGTAGATGTCCGCTGGGTGATTCTAGGAAATGTGCTAGTATAGCTCTACAGTGCTTCAGTTGCAAAGCTTTATTTCATGTAAAATACACAGTTTATAAACTTGTCCACTTGGTGATTCTAGGAAGTATTTATGTAAATTACACAGCATGTTTATAAAGCTGTCCACGGGGTGATTCTAGGAAATATGCCCATTTAAATCTTACGTGCTTCACTAGCATATCTTTATTTTATGGAAAATGACGTATTATAAGGACTGAAGATTTTTGGAGCCAGATTTAATTTTTGACCGACAGCGGGAACGCTGGACGTCCTCTGGGTGAAACATAGAACTATTTATGGAAAGTGCACGTCGGCGTGTCTAAAATGATGTCAACTACGTGATTCTAGGATATTCATACATAGAAGTCTGACTAGTACTGAAGATAACATCTTTCCCTCATAGCCTGGAAATTAGATGTGGACTGGTATGCATTATGAACTCAATCTTGCATACATTTCTAATGGCTATAGTGGCATGTTAACTCTCTTCATACACAGTATAAATTGAGGGAGCCGTTACGATTGTGCCCTTAGGCAAGGCATTTAAATTCCACGTTGCCTCTTCTCTCTCCCTTGTGACGAAGGATTCCATCAGGAATGAGGTCTCAAGAGTGATTAATAT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789	UBX	UBX domain	Domain	Interproscan
PF08059	SEP	SEP domain	Domain	Interproscan
PF14555	UBA_4	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012	Domain	UBX domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR012989	Domain	SEP domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036241	Homologous_superfamily	NSFL1 cofactor p47, SEP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23333	UBX DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000045	Biological Process	autophagosome assembly	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007030	Biological Process	Golgi organization	Interproscan
GO:0031468	Biological Process	nuclear membrane reassembly	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061025	Biological Process	membrane fusion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-