Gene detail

Detailed information of Ama23000 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama23000	TRANSCRIPTION FACTOR ONECUT	chr17	24521802	24576254	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Ama23000

GTCTAAACATGGAGGTTGGCCGAATCGTTTATCTACAGAGTTCTAATCGTACGTAATAGCCCCTTTGGATCGAAATAACCAACCAGAATTCGCTACCAAAGGTTACTACATTTGACAGTTTATCATTCTTTGTTGTTCGATCGCTTGTTGATTGTAGAATGACGATGGAAAACATGGGTGAACTAACCGATCAACAAATTAACGATTCCTCGACAACACCGATCACTTCGAGTCAGACCGTCAGCGAGGACGAGTTCACAGTTACTCCTAAGCAGGAATTTGTGGACCCTAATAGTGTTGATAGTGTCAGTGTTAGTCCGGATGTAGGAGAGTCAACACCTAGTGGAGAATTACCTAGTGCGGAATTAACTAGCGGGGAGATCGACTCCCCTGCTTCTATTACGCGTTCGGACATAGTCATTCCTGTAAGTATGATCGACTCACATGAATATCGTTCTCAGATGGGAGATCTCACATACCAAACATTGAATGGACGGATGAGTCCAAGCTACAGCCCAAACAACTATGCTACACTTACGCCGCTGCAACCTCTACCACCAATTTCAACCGTGTCGGATAAATTCCTACAAAATCAGACAAACAACTTTCAGCTTATGAATACCATGAATAACGCGATAAATGGATTACAAGGAATGGATAACGTTATGAACCTGAATACTTACAGTTATGACAAAATGATGAACACTATGGCACCGGTGTCATTGCCCATGGTGTCTATGGTCGGACAAGTGAATGGATATACCAATCAGTCAATCGGTGTCGGGTACACTACATACAATGTTGGACAAAATGGCATATCCTCACCGAAATCAGTGGAAATGAAACCTATTTTGTCACCCAACCATTCTACAGCTTATGATCCGTATCAGCAGAATCTTGTATCAGTACCGTCCCGTATACATTCACCCATGAAAATTAAACAGTGTGATTCACCTATTCCTATGATGCAGAGTGCAAATGGGCTACATCTCAGTCCGTCGGGTATGGAAAGTACATCCCCACATAGCATGCACAGTGGAAGCCCTCAGCATCAAGGGCTGGATCAAAATGGTAAAGAAGTGGAAGAAATAAACACTAAGGAACTTGCACAAAGAATTAGCAGTGAACTGAAAAGATACAGTATACCGCAGGCAGTGTTTGCACAGAGGGTGCTGTGTCGAAGTCAAGGGACGCTAAGTGATCTGTTGAGAAATCCAAAGCCATGGAGTAAGCTAAAGTCAGGGAGAGAAACATTCCGGCGGATGTGGAAGTGGTTGCAGGAGCCAGAATTTCAGCGTATGTCAGCCCTGCGACTGGCAGCCTGTTTACAACCCCAAGAACCAGAGGGCCAAGGTGAGGACTACAACCCATACAATGGGTGGAGTGAGGCCAGTTCCTTTTCCAATGATGTGAAAATTGAAGTGAAATATGAAATAGACAGTGATCCAGGGAGCCCAGCTAACTCAGTCGTCTCGAACGGATCTACACTTGGATCAGTGAAAAGAAAAGAATCGGAGATGCCTACCCCTCAGGAAAACCGCGGGCCAAAAAAGCCAAGACTTGTGTTTACTGACATTCAGCGCCGCACTCTACATGCAATATTCAAAGAGACGAAACGACCTTCAAAGGAGATGCAAGCTACAATAGCCCAACAACTTGGTCTTGAAGTTACGACTGTCGCAAACTTTTTCATGAACGCACGGCGGAGATCGGTGGATAAGTGGCGGGATGATAACGGAAATGATAACCGGGAAAGTGCACCTACCGGGATGCCAAAAAGTTGAAATAATGTCATGTGACTTAAACAACTGTAGTTGTTCCCGTGTACAAACAACAGAAATTAACAAACTCCGTGAGTGTTCGCGAAAAAATAAGCAACAGTTCCGTTAAAACAGAAATGCTGAAGAGTTGCTTTACGAATCGGGGTGTTGTGTTCAAATGCAGTGTTCCGAGTTCTTACCCCCTACACATTAAAGACTTTTATGTTTGTGTAACGTGGATTTCAAATGATGTAGAGTAGGATTGTTTTCATGTGTATAGACATATTTATGCTATATGACGTACATCATTTGTTGTACAAAAGATGGAAAAAACTTGCTGTAGCCTGTTGTGACATATGTGTATAGATCCATAACATAAATTTCAGCAGTGTCTCATGTTAAATATGCGAATGAAATGATCTGTATTTATTGAAACTAATGTGTATATATCGATGTTTTATTTATACAACATTCCCCATTTACTGACGTTAAATTGTGTAAAATTTTATTTAGGTAACGGTATTGTTTTAGAATCATATACGGAGGATTCTCAGCTCAATGTGGTAGCATAGTAGTGTTCTTATTTATTTCTCCATGTTGATTTATACCTTTTTTGTTTTACGTTTCCTTTCTTTCTAGAAACGTAGTCGATATTTCTTTATTGATCAAATGAACTCCCTATGTTTTTAACTTACATTTTACGTTGATCTGAATATATATATACTATTACGAACAGATGTGCTCGTTTCAAATTGAAAATCATCGTGCTTTTACTAAGAAATCCAGGAACCAGTTATTAGGTAGATATATTGAGAGATAATGTTTGTTAGAGGTGCATCTTGGGAAATGTGTCGTGAACGATGCATTCTGGGAGATAATGTACGTTATGAGACGAGTCTTTCGTGGATGCAGCGTGAGAGATAAAACTGGATAGACGGGAGAGAAATGGTACAAGACCACATTAAGTTATCTGTTTTCCCAGAGAATCTCTATGAAACTGTGAGTGCGTTAATATATCCCGTTTAGTGGGTGTTGTATTTTGTATTCCTACTAACATCTCTCTCCCTTAGAAGCACGTAGTGTTTCAAATATATGTTGACACCGGCAGTCGTTTTTCACGTTTGTTGGCTGTGTGTACAACCTGTGCTATGATTCAAAACTTGATTCATGGCAGCAAAGTCTGCATTACACTCGTTATTAATATTATGATATCGGGAACACAATTTGAACATGGG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox
Transcription Factors Family	CUT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF02376	CUT	CUT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR003350	Domain	CUT domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR051649	Family	CUT Homeobox Domain-Containing Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14057	TRANSCRIPTION FACTOR ONECUT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-