Gene detail

Detailed information of Ama12165 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama12165	MYELIN TRANSCRIPTION FACTOR 1-RELATED	chr12	39382324	39438098	+

Gene Structure

More details in Jbrowse Sequence

CDS

Ama12165

ATGAGTACAAGGAAGCGCAGAGAAAGTCGGAAGGTTCTAGAAGAGAAGGAACGATTGCGAACTATGTATGAGCCAGGACGTTACACTTGTCTGGTTGATGGCTGTGACAGTATGGGTCATATCAATGGAAAGTCAATGAAACACAGAAGTGTTGCAACTTGTCCACTAGCCAGGAAAAGGAAGCATGTGGATGTAGAGAGATCTGATGAACCGGCAACAAAAATACCAAAGCAAGAGATTAAAGAAGAAAAGGAAGATGATACTGTACTGTTAAAGGAAGTGTCTGATATTCCGTGTGAACTTGTTAAAGTGAAGGAAGAACCTATCACAGAAGATGATAGTGGCCTGTTTAAGGGACCAAATAGAATCATTATTACACCAATTAAGGTTAAAAAAGAAAAAGTTGACAATTTGTATGACGAAAACAGTGGAATTGGGAAAGAAAATGAGATTGAGGCGTTACGGAGTCTTGAGCAGGAATGTGCTCGTATACAGAGTGAGAACAGTACCAGTAGTACAGAATCCGTGATGGACACCATACTGAGTCCGGTAGACATTCAGCAACAAGTCCAGAATGCCATTCAAAATAAGTTACAGATTGCTAGTGTGAGCATAGCAAAACCAACTTCACAAAACCAAACCATAAATCAGCAAGTTAGAGATATGCTAAATACCAACGATAACGCTCTATCACTAGAACCAGAAAATACACAAACCATTGATATGGCATTGGATGAATTGAGAAAAGCTGGGGATGAACTAGCAAGTGCAGGGCCAAGTAAACATAATGAATTTTCAGCAGAGCCCCCAGGTACTGCAAGTAGTAAGGTGTTTGGTAAGGCTAATAGTGCCAGGGACCAGACAGTGTCTGGTACTCATATGATTGTAAAGCAGGACTTGAATGATAGCAGTGACGATGATGACGATGAAATGGACGACAGTGGGGAGTATATGGTGCTAGCCGAGTGGACAGACGGAAAACTTGAAGAGGCTGGATCAACGGCAACGGATAAGGAAAATGATAAAGATAAAGATCAGGGTGCTACAAAACATGTTAAATGTCCAACACCAGGGTGTTCTGGGGAAGGTCATCTGACAGGCCTATACACTCATCACAGAAGTTTATCAGGCTGTCCTAACAAATCCGAGGCTCCAGTAGAAGTTGTTCAAGCCAATGAACCAAATCTAAAGTGTCCGACGCCAGGATGTAGTGGAAGAGGACATGTGAACAATAGCAGAAGCATGCACAGAAGTGTATCTGGATGTCCAATTGCAGCTATGGGAAAGTTGTTGGGACATGAAAACCGCAGGAAAGCTAGTTACCACCTAGTCATTCTACCGAAGCAAGACGACCCAGCAAAGGCCATACTGGCCGCTTGTACAGAAAAACAGCTCATCAAATTAGCCGCAAAACAACTTCACCGCCCTGACCTCTTAAAGAATTCTGCAACCGATAGAATTCTTCGACCCATGATACTCACCAAACAGTTTGACCTTGCATCCGGCTCGTCCGTCACCACACCAAGAATAAATCTAGTCAAGGAACTGGAAAAATTCAACCGGCAAAACCATTCAAATGTAAAAGCAGCCGTTGAGACTGATATAGGAGCACAAACAACATCGCCTCCCAGTGAAGTGAGCAAAGATAAACCACCTGCTCCTGTTCGACCTGTGTCCAGGCCAAACATTCTCAGCAGAAGAGCCCGTCATCGCCCTCAGCAGAGGTCTTCGTCATTAGATTCTGTGTCATCGACATCATCTACAACATCTGCTGCTTCATCATCCAGCATCCCAGCATCATCTATGATGCCATTGTCTTCCATCATACCGAGACTATCATCCATGGTAGATATGAATTTGGAGAAGGTTAAGGTAGATCCAGAGGTGCTGAAAGCCGCTCAAGAGATGCGATTCTTCAAGGGAGACGATACCCCCGTGTCTGCTGCAGCGGTACTAACCATTCCAAATCCTACTCTCTTGGGAATATCAAGTGCCAGTAATTCATCAAAACCATCAAAACCATCTACTGCAGTGACAATTTCACAAGTGTTAAGCACTTCAAATAGTTCATCAATACCCGTGTATACTAACGCGACACATAACCTCATTTCTTCTCAGACTGTGGCAAGTACAGTACGTGTACAGTCAGGATTGAAAGATCATCAAATTACTGTGACGGCAACAAATTCAAACAATTCCATGATAGTAGGGTCTGTCCTCAAGACTTCTGTAGTGACAGACCCAACTACACTGCCTGTTTTGATGCCAGTTGCCACAGATAAAGCCTTCGCAGCAAGTCCAGATGATGTGGTACTGCCTGCAGGAAAAGGGTATGTTGTTTTTAAACCTATGGGTAATCTGCCAAAAGATTGTGTTTACTCAATTGAATCATCAACTGGTATTATAAATGCTGTAGTCGAGCCTGTCAAGTTTGTTAAACCCAAAACCCCAGCACCCAAAGTTGTTGACTCTGGGATTGATACTAAAACCAGTATTCCTAAAATACAGACATCTTTTTCGTCAATCATGACGTCAAATGTATTGCCCCAAACCATGGCAAAGTTCAGATATACGATAAGTCAGCCACATGTACAAACTGGAAATGTTGGAATGATACGGCCTGGTTATAGATCATGTAAATTAAAACGAGATGTACAAACATTGAGTAAACCAATAATAAATCCAGCAGTCCGTGCAATGTTGAGATCTTATATTTCTCATGAAAGCTCCAAAGTCTTAGCAAGCAACACTCAAATCATGACTGGAATCCCCCAAATTGTAGCAGGAAGCCCCCAAGTCAGAACAGGAATCCCTCAGATTGTAAATGGAAGTCCACAATTCATAACGGGAAGCTCCCAAATTGTAACTAGGTGCCCACAAATAATAACTGGAAGCCCTCAGATAATAACTGGAAGCCCCCAATTCGTAACTGGAAGCCCACAAATTGTTTCTGTAAGCCCCCAAATATTAACTGGAAACCCCCAAATTGTAACTGTAAACCCCCAAGTTGTAACTGGAAACCCCCAACTTGTAACTGGAAACCCCCAAGTGTTAACTGTAAATCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTAACTGGAAGCCCCCAAATTGTAACTGGAAACCCTCAAATTGTAACTGGAAACCCTCAAATTGTAACTGGAAACCCCAAAATTGTAACTGTAAACCCCCAAGTTGTAATTGGAATCCCCAAAATTGTAAGGGGAAACCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTATCTGTAAACCCCCAAGGTGTAACTGTAAATCCCCAAGGTGTAACTGAAAACCCCCAAGTTGTAACTGTTAACCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTAACTGTTAACCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTAACTGTAAACTCCCAAGTTGTAACAACAATCCCCCAAATCATGAGAAATCCCCAAATCATGAAAAATCCCCAAATTTTAAGCACCAAGTTTATGACATCTGTGAAAACAGGATTACCTGTAGTCAACGAAGTTAATCAAAGCCACACCCACAGCACAGATTTACGGGTGGAGGATAAAGTTGGTACACAGCGCTTTGTATTAGAGGGTATGAATCCCGTAAGTCAGTGTCCTGTTCTTAAGTCTAGCCAGGCAGTCCAACAAGATGCTGGTTCAAGCGTTCTATGTGAAACCGTTCCAGATGAGCATACAAGTATTGTTGTTGAACCAGATACTGTAAGCACTGCTGCGCCTGTTGAGTCAATTACTGCCTCAACCCTTATAGACGACACTTGTTCAAGTAAGCCTCCAGATTCCCTGTGCCCTACTGTTATCCAGCCGTTTACTACAGTTGTTCCTTGGTCAACATTGAAAAAACTCTTCACAGATCCGATAGAAAATTTGAAACAAGAGCACATGACCTTAAATCAACTTATTCAGCTATCTAAAAATGTCAGGATAGAAGCCAACGCTCCTGCAGAAAGCTCCAATTTACCTGTACTGGTAGACCCTGATGGACTGTCCACAGAGATCAAATATGATGGATCACAATTGGATGCAGCCCCGTTTGCAGAAATTCGCACCATACCCGTACTTCTAGAACCCAAGTTCAAAGTTGAAGGGCCAAATGTGATACCCTGTGAACAATTACTTAATCCCGCTCAGTGGTCCACAAAGGTGAATCAGGAAGTGTCACAGGCAAATCCCTGTGCACCAGCATCGCTAGTCAAAACAACAGTTTATAAGGTGTACCCTGGTACAGCAGAAGTCCCTCCTCTACATGTTGACATGGGAACGATATAG

Transcript

Ama12165

GCCATTTCCGGTTGGAATAAAACTTTCAGCGCGCCATAATTCGCAGAAAACTGTTTCTAATCATTACAGATACTGATTTTATTTGCATAAATGTTGCTGGGTCATTGACGAGAATTATTAGCAGGAAAGATGAGTACAAGGAAGCGCAGAGAAAGTCGGAAGGTTCTAGAAGAGAAGGAACGATTGCGAACTATGTATGAGCCAGGACGTTACACTTGTCTGGTTGATGGCTGTGACAGTATGGGTCATATCAATGGAAAGTCAATGAAACACAGAAGTGTTGCAACTTGTCCACTAGCCAGGAAAAGGAAGCATGTGGATGTAGAGAGATCTGATGAACCGGCAACAAAAATACCAAAGCAAGAGATTAAAGAAGAAAAGGAAGATGATACTGTACTGTTAAAGGAAGTGTCTGATATTCCGTGTGAACTTGTTAAAGTGAAGGAAGAACCTATCACAGAAGATGATAGTGGCCTGTTTAAGGGACCAAATAGAATCATTATTACACCAATTAAGGTTAAAAAAGAAAAAGTTGACAATTTGTATGACGAAAACAGTGGAATTGGGAAAGAAAATGAGATTGAGGCGTTACGGAGTCTTGAGCAGGAATGTGCTCGTATACAGAGTGAGAACAGTACCAGTAGTACAGAATCCGTGATGGACACCATACTGAGTCCGGTAGACATTCAGCAACAAGTCCAGAATGCCATTCAAAATAAGTTACAGATTGCTAGTGTGAGCATAGCAAAACCAACTTCACAAAACCAAACCATAAATCAGCAAGTTAGAGATATGCTAAATACCAACGATAACGCTCTATCACTAGAACCAGAAAATACACAAACCATTGATATGGCATTGGATGAATTGAGAAAAGCTGGGGATGAACTAGCAAGTGCAGGGCCAAGTAAACATAATGAATTTTCAGCAGAGCCCCCAGGTACTGCAAGTAGTAAGGTGTTTGGTAAGGCTAATAGTGCCAGGGACCAGACAGTGTCTGGTACTCATATGATTGTAAAGCAGGACTTGAATGATAGCAGTGACGATGATGACGATGAAATGGACGACAGTGGGGAGTATATGGTGCTAGCCGAGTGGACAGACGGAAAACTTGAAGAGGCTGGATCAACGGCAACGGATAAGGAAAATGATAAAGATAAAGATCAGGGTGCTACAAAACATGTTAAATGTCCAACACCAGGGTGTTCTGGGGAAGGTCATCTGACAGGCCTATACACTCATCACAGAAGTTTATCAGGCTGTCCTAACAAATCCGAGGCTCCAGTAGAAGTTGTTCAAGCCAATGAACCAAATCTAAAGTGTCCGACGCCAGGATGTAGTGGAAGAGGACATGTGAACAATAGCAGAAGCATGCACAGAAGTGTATCTGGATGTCCAATTGCAGCTATGGGAAAGTTGTTGGGACATGAAAACCGCAGGAAAGCTAGTTACCACCTAGTCATTCTACCGAAGCAAGACGACCCAGCAAAGGCCATACTGGCCGCTTGTACAGAAAAACAGCTCATCAAATTAGCCGCAAAACAACTTCACCGCCCTGACCTCTTAAAGAATTCTGCAACCGATAGAATTCTTCGACCCATGATACTCACCAAACAGTTTGACCTTGCATCCGGCTCGTCCGTCACCACACCAAGAATAAATCTAGTCAAGGAACTGGAAAAATTCAACCGGCAAAACCATTCAAATGTAAAAGCAGCCGTTGAGACTGATATAGGAGCACAAACAACATCGCCTCCCAGTGAAGTGAGCAAAGATAAACCACCTGCTCCTGTTCGACCTGTGTCCAGGCCAAACATTCTCAGCAGAAGAGCCCGTCATCGCCCTCAGCAGAGGTCTTCGTCATTAGATTCTGTGTCATCGACATCATCTACAACATCTGCTGCTTCATCATCCAGCATCCCAGCATCATCTATGATGCCATTGTCTTCCATCATACCGAGACTATCATCCATGGTAGATATGAATTTGGAGAAGGTTAAGGTAGATCCAGAGGTGCTGAAAGCCGCTCAAGAGATGCGATTCTTCAAGGGAGACGATACCCCCGTGTCTGCTGCAGCGGTACTAACCATTCCAAATCCTACTCTCTTGGGAATATCAAGTGCCAGTAATTCATCAAAACCATCAAAACCATCTACTGCAGTGACAATTTCACAAGTGTTAAGCACTTCAAATAGTTCATCAATACCCGTGTATACTAACGCGACACATAACCTCATTTCTTCTCAGACTGTGGCAAGTACAGTACGTGTACAGTCAGGATTGAAAGATCATCAAATTACTGTGACGGCAACAAATTCAAACAATTCCATGATAGTAGGGTCTGTCCTCAAGACTTCTGTAGTGACAGACCCAACTACACTGCCTGTTTTGATGCCAGTTGCCACAGATAAAGCCTTCGCAGCAAGTCCAGATGATGTGGTACTGCCTGCAGGAAAAGGGTATGTTGTTTTTAAACCTATGGGTAATCTGCCAAAAGATTGTGTTTACTCAATTGAATCATCAACTGGTATTATAAATGCTGTAGTCGAGCCTGTCAAGTTTGTTAAACCCAAAACCCCAGCACCCAAAGTTGTTGACTCTGGGATTGATACTAAAACCAGTATTCCTAAAATACAGACATCTTTTTCGTCAATCATGACGTCAAATGTATTGCCCCAAACCATGGCAAAGTTCAGATATACGATAAGTCAGCCACATGTACAAACTGGAAATGTTGGAATGATACGGCCTGGTTATAGATCATGTAAATTAAAACGAGATGTACAAACATTGAGTAAACCAATAATAAATCCAGCAGTCCGTGCAATGTTGAGATCTTATATTTCTCATGAAAGCTCCAAAGTCTTAGCAAGCAACACTCAAATCATGACTGGAATCCCCCAAATTGTAGCAGGAAGCCCCCAAGTCAGAACAGGAATCCCTCAGATTGTAAATGGAAGTCCACAATTCATAACGGGAAGCTCCCAAATTGTAACTAGGTGCCCACAAATAATAACTGGAAGCCCTCAGATAATAACTGGAAGCCCCCAATTCGTAACTGGAAGCCCACAAATTGTTTCTGTAAGCCCCCAAATATTAACTGGAAACCCCCAAATTGTAACTGTAAACCCCCAAGTTGTAACTGGAAACCCCCAACTTGTAACTGGAAACCCCCAAGTGTTAACTGTAAATCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTAACTGGAAGCCCCCAAATTGTAACTGGAAACCCTCAAATTGTAACTGGAAACCCTCAAATTGTAACTGGAAACCCCAAAATTGTAACTGTAAACCCCCAAGTTGTAATTGGAATCCCCAAAATTGTAAGGGGAAACCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTATCTGTAAACCCCCAAGGTGTAACTGTAAATCCCCAAGGTGTAACTGAAAACCCCCAAGTTGTAACTGTTAACCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTAACTGTTAACCCCCAAGTTGTAACTGGAAACCCCCAAGTTGTAACTGTAAACTCCCAAGTTGTAACAACAATCCCCCAAATCATGAGAAATCCCCAAATCATGAAAAATCCCCAAATTTTAAGCACCAAGTTTATGACATCTGTGAAAACAGGATTACCTGTAGTCAACGAAGTTAATCAAAGCCACACCCACAGCACAGATTTACGGGTGGAGGATAAAGTTGGTACACAGCGCTTTGTATTAGAGGGTATGAATCCCGTAAGTCAGTGTCCTGTTCTTAAGTCTAGCCAGGCAGTCCAACAAGATGCTGGTTCAAGCGTTCTATGTGAAACCGTTCCAGATGAGCATACAAGTATTGTTGTTGAACCAGATACTGTAAGCACTGCTGCGCCTGTTGAGTCAATTACTGCCTCAACCCTTATAGACGACACTTGTTCAAGTAAGCCTCCAGATTCCCTGTGCCCTACTGTTATCCAGCCGTTTACTACAGTTGTTCCTTGGTCAACATTGAAAAAACTCTTCACAGATCCGATAGAAAATTTGAAACAAGAGCACATGACCTTAAATCAACTTATTCAGCTATCTAAAAATGTCAGGATAGAAGCCAACGCTCCTGCAGAAAGCTCCAATTTACCTGTACTGGTAGACCCTGATGGACTGTCCACAGAGATCAAATATGATGGATCACAATTGGATGCAGCCCCGTTTGCAGAAATTCGCACCATACCCGTACTTCTAGAACCCAAGTTCAAAGTTGAAGGGCCAAATGTGATACCCTGTGAACAATTACTTAATCCCGCTCAGTGGTCCACAAAGGTGAATCAGGAAGTGTCACAGGCAAATCCCTGTGCACCAGCATCGCTAGTCAAAACAACAGTTTATAAGGTGTACCCTGGTACAGCAGAAGTCCCTCCTCTACATGTTGACATGGGAACGATATAG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2HC

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01530	zf-C2HC	Zinc finger, C2HC type	Family	Interproscan
PF21300	LbR_Ice_bind	Grass antifreeze beta roll	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002515	Repeat	Zinc finger, C2H2C-type	Interproscan
IPR011049	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR036060	Homologous_superfamily	Zinc finger, C2H2C-type superfamily	Interproscan
IPR048518	Repeat	Ice-binding protein, beta roll	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10816	MYELIN TRANSCRIPTION FACTOR 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-