Gene detail

Detailed information of Ama03553 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama03553	OXIDOREDUCTASE GLYR1-RELATED	chr6	19846014	19985202	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Ama03553

GCCAAACAAAGATGGCGTCTAAGTTGCAAATCGGCGATCTTGTCTGGGCAAAGATGAAGAGTTTCCCTGCATGGCCGGGAAAGATCATTGAGCCCAAAGAAGATATAAAAAGACCAAAGAAGGATAAACTGCAGCACTTCATTTATTTCTTTGGATCAGAGAATTATGCCTGGCTCCCACATGAGCATGTGTATGCATATATTGGGAACAAAGAGAAGTTCCTGCTGCGTTCCCGGGTACCAAAGGGCTTCAAGGAGGCGCTAGAGGCCATGGAAGATGCTATCAAGGCAATGCCGGAGGAGGCACTGACGGCATATCAGGAGCGAATGGCTAAATCCGAACCAGAGCCTATAGAAATGAACAACAGTACTGACAGCCCGCCATCAGATAAACCGAAAAAAAGCCCAGTAACAGACAAATTGAAGAAGAAAAAACGACCCAGAGACAGCACAGGACCCAAAGATAGCACAGGAGATGAAGGATCTCCAAAAAAGACACCAAAAGCGATCAAAACCAGAGCATCGACAGGGGCAGACTCGGCAAGCCATAAGAAAAGGAAACCAGTAAAGTCTTTGACACCATCAGAAAAGATTCTTAAGAGAGCCAAGCTGACAGCAGGCGCTTCACCATCCTCAAATATATTCTCTGCCCTATCACCAAACAAATCCCTATCAACCACAAAGATCAGAGATAGAAGGTTACCCGAACTGAAGGTATCAGAAAGTGACCTTTCCTACGACCCGAATCTAGGTGCCCCGGGAATGCCACTGTCTGCTGCCACGGAAGCCCTGATGGACGACATAGGGGACTCGAAGACGGCTGTAAAATCTGTGATCCCCACACCGATGAGGATAGGCTTCCTGGGTCTCGGGATCATGGGGCAGGGTATGGTGATGAACCTGCTGAGGTCGGGTCACGAGGTCACAGTCTGGAACAGAACTTCGCAAAAGTGTCGAGACTTTGTGAAGGCGGGAGCATTAAAGGGTAGTTCCCCGTGCGAGGTGGTACAGCAATGCGACATCACATTCTGCTGTGTGGCAGACACTACTGCTGTCAAAGATATAGTGTTTGGTAGTCACGGAGTTTTACGAGGTATTGCTACAGGCAAATGTTTTGTTGAAATGTCAACAATAGACGAGGAAACTGTACAGGATGTGGCAGAGGCAATACAAGCACGAGGGGGCGTCTATTTAGAAGCCCCAGTTGTTGGTAGCCGGGTACCAGCTCTGGAAGGGCAGCTCACCATACTAGCTTCAGGGGATAGAAAGCTGTTTGATGATTGTTTCTCATGTTTTGAAGCCATTGGCAAGAAATCTCTATACTTGGGTTCAGATCCCGGCGCAGCCACCAGAATGAAGCTGATTATCAACATGGTGATGGGTACAGTTGTGGCCAGTCTGGCTGAGGGCATGGCCATGGCAGAGAAGGTCGGCCTTGACCTTGAAGATGTTGCCGAAGTTCTCAGTCTCGGCTCTCTCAGGTGTCCCACCGTTATACATAAAAGCCAGGCAATATTAAACCAAAAGTATGATCCACATTTTCCATTACAACACCAACAGAAGGATCTTCGTTTAGCGTTGCAGTTGGGAGATAAAGTTGAACAACCTCTATACATCGCTGCTGCTGCCAATGAGCTATACAAGAAGGCGAGACGTTTAGGGTACGGGGAAAGTGACATTTCTGCTGTATTTCGTGCAGCAAGCAACTGAACTACTATTGTCAATGTGTTGTTGATAAAGTTAAGTGTACGGTATAATATGCTGAGAGATGGGAAAAGAGCAACCAGTCTCCGAGTCAAGTTCAAAGCGGGCGATAAGTAAAAAGATTTAGAATGCGATTCACGAGGAAGGAGTTTAGCTAAAGTAATACGATTTTATAGAAAAATGAAAACTTGGAAAAGGTTGATGATTTAGTGAAGGGACATCAGGCGTGGCGATGGAGGATAGATACGTAAATCCGCTAGCAAAACCTAGAAGGGACAGATGCGAACTGTAGTGTAGATCTTACTTAGGAAGTGTCGCAGTAGAAACATACTGTGTTGAAAGTGTGTACATGGATATTTTTAAGCATGTGAATCAAATTTTGATCAATTGCTAATTTTAGCAATGACATAATTATGTTCATATTTGATTGATGGCTATTTTTAGCACAGAAATAGAACTGGTACATTTTGATTGATAGCTATTTTTAGCACAGGAATATGTCATATTTGATTGATGGCTATTTTTAGCACAGAAATAGAACTGGTACAGTTTGATTGATAGCTATTTTTAGCACAGGAATATGTCAATTTTGATTGATGACTATTATTAGCACAAGTGCATGCATGTCCATTGTTGTTTCTTTTAGCTGAGGTGCATGTGTACATCATTTCTTGTTTTAGAGCAAGTATCTCGTTACGGAGATAGATTTTAACTGACAAGAACAACGGTATGGTGTATTGTATAAACCGATGTTACTGACTTGTTACATTTTATTTGTGAATACTTAATAGTACTGTCGTACACACAAGATATATGGTTAACCCATTACTCTACATATATGCCATACAACACCTTTATAGCTTCCCACAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855	PWWP	PWWP domain	Domain	Interproscan
PF03446	NAD_binding_2	NAD binding domain of 6-phosphogluconate dehydrogenase	Domain	Interproscan
PF14833	NAD_binding_11	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000313	Domain	PWWP domain	Interproscan
IPR002204	Conserved_site	3-hydroxyisobutyrate dehydrogenase-related, conserved site	Interproscan
IPR006115	Domain	6-phosphogluconate dehydrogenase, NADP-binding	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR013328	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR029154	Domain	3-hydroxyisobutyrate dehydrogenase-like, NAD-binding domain	Interproscan
IPR035501	Domain	Cytokine-like nuclear factor N-PAC, PWWP domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR051265	Family	HIBADH-related NP60 subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43580	OXIDOREDUCTASE GLYR1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0050661	Molecular Function	NADP binding	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-