Gene detail

Detailed information of Ama03079 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama03079	TRANSCRIPTION INITIATION FACTOR TFIID	chr6	4795620	4817682	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Ama03079

TACAAAGCCACCATACAACAACAAAAAATATGGCGCTGATTTGATCCATACTTTTGTAATTTGTATAACTTGACGGTTGTATTGGTTCAAACATCAAGATGAGCTCAAGCATAGAGACAGACACGGGAGTTCACAAGATGCCGGTACCCGACTCAATCGTGCAGTAAGCTAAGATAACCTAGGCATGATGGACATGTATGACCCTGGTGATGGGGACTCTGGTTCGCTGGACTCGTCAGTGTCATCGCTTACTGGCTTCCTGTTTGGTAATATAGACGAGAAAGGGGAACTGGAAGAGGATTTTCTTGATGAGGAGTCGAAGAAGCACCTTGGGTCACTCAGTAGCCTCGGTATCGGTTCTCTTGTAAGGGAGATAACTGATGATACAGACCAGTACCAGGATGCATCAGACAGCACTGATGATTTATCACCAGGTTATGAGAAGGCCCCGGATGCTGTTGATTTCTCTGACATTACTGAAGTGGCAGAGGAGGAGGAGGAAGACAAGGCTAAGATTAAAGAAGCTATGTCATCCATGCATCTTCTCAGACAAGATAGCCAGGAAGATGACTATGATTACAAAGATTCTCAGCTGATGCCCCCGCCATCGTGGCTGCCAACACAACCCAAACCTGACGGCAAGCCTGCTCTACCCATGGCAGGTGGCGACCAGCTGGAGGGGTCTACCCTGTTGCTGAATACCCCCCTAGCAGCCATGTTACCCCCAGAACTGAAGAATGCAGACGTCACACACTATTTCCCAGAATTCAGAAAAAATCAGGTGTTACGTTTCTCCCGCCTGTTCAAGCCTGTACACCATCCCCATATCTGGAAACGAAAGAAGAAAAAGAAGGAAGACGGAGAAGAAGAAACGGAAACGGAGAAAAATGAGGAAAAGGAAAAAGAGAGTGTAAAACCAGCGAGTGTTAAGGTGGAACCTACACAGCCTACGGGAGTGACTGATTCCACAGAGACACAAGACAGCAAGGAACCAGAACCAGTCAAATCAGAATCCATGTCTACACCCACAACTGATATTGAAATTAATGTTGAAGTAGCACCAGAAGCCGGGAGTCATGAGAGTAAGGACATAGATATGTCTGGTTCCCAGGAGGACAAATCTGACAGTGGTATCAGTGGTGTAGGCGAAGATGAGGAGGAGGAGGAGGACGATGAAGACATCGTTGCACGGATGTTTGGGACGAAGATCAAGTTGAACATGGGAAGGCCGGCCCTGCCGGAGGAAATGGCCCTTAGTGATGAGGAATTGTTGAAGCGAAAGGAAAATGGATCAGGGGTCAAGTCTGAGAAGACAGCCAATGGCACTTTGAAAGATGGCGACATTGATGTTGCACCATGGAGGTACGGCCCCGCCCAGTACTGGTATGACATTCTAGGGGTCAACGAGACAGGTGACGGGTTCGATTATGGATTTAAATTGAAGACGGAACCTGACGAGCCTTCGGAAACTAAGCAAATTAAGCAGGAACCAGGTACCAGCGAAGTGGAGATGGCGCCAGACTGTCCTGACGAAGCATACCTGATGATAACCCAGCTACAGTGGGAAGACGATATCATCTGGAGCGGAGAGGAGGTCCGACAAAAGGTGTTACAGTCACAGAAGACAAAGCCACTGGCTGCCGGCTGGATCCCGAGCACCAGCCACAGAACAGCCGCTCAATATCTGCAACAAAATCGACCAGGTATGCTGAGCAAGCCAGGCCCTAGTAATTTACCACTGATGAGATCTATATCTGGACAGTATGGACAGAAGCCAGACATGCCAGGATGTGGGCTCATGGAGCAGGGCAAAGACAAGCAGTGGTTTTCCATATTTCCCATAGAGAACCAGGAGCTTGTTTATGGTAACTGGGAAGACGAAATCATCTGGGACTCGGAGAACATGGATTATATTCCATCGCCAAAGATCCTGACTATTGATCCGAACGACGAGAACATTATACTGGATATACCAGAAGATAAGGATCCCAGTGCACCCGAGACACCGGCAAAGAAAGAAAAGGTAAGGATCCCAGTGCACCCGAGACACCGGCAAAGAAAGAAAAGGTAAGGATCCCAGTGCACCCGAGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09247	TBP-binding	TATA box-binding protein binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009067	Domain	TAFII-230 TBP-binding	Interproscan
IPR036741	Homologous_superfamily	TAFII-230 TBP-binding domain superfamily	Interproscan
IPR040240	Family	Transcription initiation factor TFIID subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13900	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004402	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-