Gene detail

Detailed information of Ama01285 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama01285	SCAFFOLD ATTACHMENT FACTOR B-RELATED	chr5	47150748	47191750	+

Gene Structure

More details in Jbrowse Sequence

CDS

Ama01285

ATGGCCACGCATGAATCAAAGCGGGTTGCTGATTTGCGTGTAATTGATCTTAAATCCCAGTTGGAAAAGCGGGATTTAGATAAAACTGGAATCAAAGTTGTACTCGTTGAAAGATTGCAGAAGGCTCTAGAAGACGAGGGACATGACCCCAACACTATAGAGATGGAGGTGGTAGATTCACCAGTGTCCAAGAAAACGCCAATCAGAAAAACACCGAAATCAAAGTCAGACGATGAAAAAGATGATGATAAAAACATAGAAAAGATGGATGATGATGCAGAGGAAGTTGTTGTTTCTGTAGAAATCCTGGAAGCCAATGAGGAGACGGATGATGTCACTGAAGATGAAATAAAACAGGACTCTGTATCAAATGACAAAGTAACAGATGAGCAACAAAATGGTGATGCGGAAGAACATACTGATGCTCCAGCAGAAGCTTCTGACGAAGTAGAAGGTGAGCAGAACAACGAAGACGCCCAGGAAGAGATTATGGAGACCGTCAGTGAAGTTAATGAAGATACAGAAGCACCAGAGACAGCCCCAGCAGCCCCTAGTTCTGTTACTACTGAGACTGCTGCTAAGTCCACTGTTTGTGAACAGAAGGACATCCAACAAGAAACTCTACAAACTGTTAGTGATGCTGACAAACAAAAAATGGACTCTCGTACAACTTTGAAAGTTGAACCATCTGAGCAGATACCGGAGAACGCTGAGAAGACTTCTGACGAACCAATGGATACAACAGAGGCATCTTCTGAATCTGCAGTAAAAAGTGAAGGTGATAATTCCGTTGCACCTACTGCTGGACCGGCTGCAACAAGTGCAGCAGCTGTTATTGTGAAGGTAGACAGTTCAGTTGTAGAAACAGTTGCAGGGGAGGACAATAAGGGGTCTGCTAATGAGCAGCAGAAAGATAAAGTAGTTGATGAAAAGGTTGAGGGTCAGAAGGCTGAAGGGGACAGTGAACAGCTCGAGGTGCTAGTGGATGATACTCAGAATGATCTAGATGCCGATCTCATCAACTCCCAGAATGCGGCGAAAACCGAGGGAACTGTCGTGAGCGAGACCAAAACTGCCGGTGATGGTAAAGATGATGCTCCTGCCAGTGGCGAAAAGACTGAAGGTGGCGAGGCAGGGAAAACAGATGCTGCCAAATCTGGTGAAGGTGAAACTAAGACTGATGACAAGAAACCCGATGAAAAGAGTACTTCCAAGGACACAAAGAAGGATGAACGATCTGGAAGTCGTAACTTGTGGGTGAGCTCATTGTCAACATCAACACGAGCGACTGATCTCAAAGTTATCTTCAGCAAGTATGGAAAGGTTGTCGGAGCCAAGGTTGTGACAAATGCTCGTAAACCAGGATCTCGTTGCTACGGCTTTGTTACCATGTCTTCGGCGGAGGAGGCAGCCAAGTGTATCCAGCAGCTACATAGAACTGAACTGCACGGCAAAATGATCTCTGTAGAAAAGGCTAAGAATGAACCAGGTTCTGCTGCTAAGAACATGCCAACAAGTAAGAAACCCGATCAAAAAAAGCCAGATCAGAAAAATACAACACCTGTGAAAAAAGATGATGGAAAAGGTGACTCTGACAAGAAGGATGATGGTAAGGATAAGAAGGATGTTGATAAGAAAGACGAGAAAAAAGATGACCGCAAGGACTCGCACCATGGCCGAGATCGCCGTGATCGTGATAGGGGACACGGCCGCTATGGTGGACGACACGACTACAGGCGTGGATCTCGTAGGTCATCGCCACACAGACACAGGGATAGTCGAGATCACAGGAAGACATCGGATAATAAAGATGCCAAGGATAAACCACGTACAGTTGTCATGGACAAGAGTAAGGGAGAACCAGTGATCAGTGTTCAGGGAGAGGAGAAAAAGGAGGGAGAGAAGCCGGAGGACCAAGTGAAGAAAGAGGGCGAAGAGGTTGTAAAGGCAGAGACAGAAGAGGGGAAGCCCGCAGAAGGTGCAGAAGGTGCAGAAGGTGCAGAAGGGGCAACTGAAGAGAAGACAGAGGAAGAAAAGGAAGCTGTGAAGACGGAGGGCGACGACAAAGCTCGCTCTAGATCTCGGGGTACTTCATCGAAGAAAGATGACAAAAAAGATGTGCTAACTCTGGAAAGAATCAAGGAGGCGAGGCAGCGCGAGCTAATACGACAGAATAACCGGCGTATAAATAATCTGGAACGGCGCCGACAGAATGAGTTGATACGGGAGAGACAGAGACAGAGGGAAGTGCAGCAGAAACAAAGACAGGAGGCAATCAAACTTAGCAGGGAACGAGAGAGACTGAGGAGGGACAGGGAGATGCTGGAGAAGGAACGCATGGAATCGCAGAGGCTAGAACGACTACGCTTGGAACAGATGGAGAGAGAACGACTGGAGAGGGACAGGGAGGAGAAGAGGAGGCTCGACCAACTCCGAATACAAGAGGAACAGCAACGCCGAGCCACAAAGCGGGCATTTGATGCACGAGATAGAGACATGTACTGGGATCCTAAGAGACCCGCCCTTGGAGACAGAAATTATGGAGATAGAATTGATAGAGACCGTTCAGGTCGGGAAGGTGGCAGATACGTTGAAAGAATATCTCAGCAAGACAATGTAGGTGACACTCGCAGGGTAGTCGACAGATTTGACCGAGGAGACCGTCGAGGAGTGGACAACACGAGAGCCGACTTGGGCACCCGGGGTGGGAGAATGGATGGACGGGACATTGGAGGACGGAGAGATGCTGCACCAGGGAATGAACGGTCGGGCAGAGATCAGAGAAATATGGCCGCTGGTCGAGATCGTGGAAACGATAGAGTAGACAGGGCACCAGCGGCGCGCAATGACAGAACGGGTGACAGAGTTCAAGCCAGAGACCATGGGCGGGACACTGGAGGATCCAACAACTATAGAGACTCAAACCAACGCGACATGAGAGACCGTGGCACGGACAATAACAGAGCTAACGACAGGACCAGTAGCCGACAGAACGCAGGTTCCAGAGAAGGTCGATCTGACTTCAGGTCAGACAAAGATCAAAGTAATGCACTGGGAAACAGAGACCATAGAGATAGCCGTGGGTCACAGCAAGACATTCGGAGCTCTAGTACGTTTGCCTCACAGACCAACAGGGGCAGCAATTGGCAGGGCCAGGGTCGGAGTGGGGGCAGCCAGGGTATTCAGGAACGCAGCAACAAAAACTTCTCAAGGAACCAGACAGGAGGGATACTGAAAAATAATGGACCACAGAGTGGAGGAGGAGGAAACCAGGGATCGTGGGGTTCCGGGTCACAGAGAACAGACAATACACAAGTGAATAGACAGCCCGATAGATGGTCCGGCAGTTCAATAGTGCAGCCCGAGACTCGTCCAATAGCCTACCAGACTGTTGGTGCTCCACCTGGCATCATTGCTAATGTTCCTACGGGAATGTATGTTACCACCTCAATGGCACCAGGGGCTCTGATGATGGCAGCGCCCAATATACAAGGTCAAACTCGACAACAAGATCAAAGATTTGATGCTTACAAAGCATTGGGACCCAACTTAAGGAGATATTAG

Transcript

Ama01285

TCTACATCCCCGCGAGCGGTTGGAAATTACAGGAAGACAGATAAAACATAACTTAATGTGCTTACTTATCCCTTTTCTTAAGTAAAGTACGCCCTTTTCTGCCACCCTTTTCTGTCATTTTCTTGAAAATGGCTATTTTCTTACTTTAGTCATACCTGTCAAATGTCCGTATCTGTTCGTTCACCAATCAAAATCCTTCGGTAAATTTCGTTTAGATTTATCTATCGGAAGCACGCCATTTACAGAAAATGGCCACGCATGAATCAAAGCGGGTTGCTGATTTGCGTGTAATTGATCTTAAATCCCAGTTGGAAAAGCGGGATTTAGATAAAACTGGAATCAAAGTTGTACTCGTTGAAAGATTGCAGAAGGCTCTAGAAGACGAGGGACATGACCCCAACACTATAGAGATGGAGGTGGTAGATTCACCAGTGTCCAAGAAAACGCCAATCAGAAAAACACCGAAATCAAAGTCAGACGATGAAAAAGATGATGATAAAAACATAGAAAAGATGGATGATGATGCAGAGGAAGTTGTTGTTTCTGTAGAAATCCTGGAAGCCAATGAGGAGACGGATGATGTCACTGAAGATGAAATAAAACAGGACTCTGTATCAAATGACAAAGTAACAGATGAGCAACAAAATGGTGATGCGGAAGAACATACTGATGCTCCAGCAGAAGCTTCTGACGAAGTAGAAGGTGAGCAGAACAACGAAGACGCCCAGGAAGAGATTATGGAGACCGTCAGTGAAGTTAATGAAGATACAGAAGCACCAGAGACAGCCCCAGCAGCCCCTAGTTCTGTTACTACTGAGACTGCTGCTAAGTCCACTGTTTGTGAACAGAAGGACATCCAACAAGAAACTCTACAAACTGTTAGTGATGCTGACAAACAAAAAATGGACTCTCGTACAACTTTGAAAGTTGAACCATCTGAGCAGATACCGGAGAACGCTGAGAAGACTTCTGACGAACCAATGGATACAACAGAGGCATCTTCTGAATCTGCAGTAAAAAGTGAAGGTGATAATTCCGTTGCACCTACTGCTGGACCGGCTGCAACAAGTGCAGCAGCTGTTATTGTGAAGGTAGACAGTTCAGTTGTAGAAACAGTTGCAGGGGAGGACAATAAGGGGTCTGCTAATGAGCAGCAGAAAGATAAAGTAGTTGATGAAAAGGTTGAGGGTCAGAAGGCTGAAGGGGACAGTGAACAGCTCGAGGTGCTAGTGGATGATACTCAGAATGATCTAGATGCCGATCTCATCAACTCCCAGAATGCGGCGAAAACCGAGGGAACTGTCGTGAGCGAGACCAAAACTGCCGGTGATGGTAAAGATGATGCTCCTGCCAGTGGCGAAAAGACTGAAGGTGGCGAGGCAGGGAAAACAGATGCTGCCAAATCTGGTGAAGGTGAAACTAAGACTGATGACAAGAAACCCGATGAAAAGAGTACTTCCAAGGACACAAAGAAGGATGAACGATCTGGAAGTCGTAACTTGTGGGTGAGCTCATTGTCAACATCAACACGAGCGACTGATCTCAAAGTTATCTTCAGCAAGTATGGAAAGGTTGTCGGAGCCAAGGTTGTGACAAATGCTCGTAAACCAGGATCTCGTTGCTACGGCTTTGTTACCATGTCTTCGGCGGAGGAGGCAGCCAAGTGTATCCAGCAGCTACATAGAACTGAACTGCACGGCAAAATGATCTCTGTAGAAAAGGCTAAGAATGAACCAGGTTCTGCTGCTAAGAACATGCCAACAAGTAAGAAACCCGATCAAAAAAAGCCAGATCAGAAAAATACAACACCTGTGAAAAAAGATGATGGAAAAGGTGACTCTGACAAGAAGGATGATGGTAAGGATAAGAAGGATGTTGATAAGAAAGACGAGAAAAAAGATGACCGCAAGGACTCGCACCATGGCCGAGATCGCCGTGATCGTGATAGGGGACACGGCCGCTATGGTGGACGACACGACTACAGGCGTGGATCTCGTAGGTCATCGCCACACAGACACAGGGATAGTCGAGATCACAGGAAGACATCGGATAATAAAGATGCCAAGGATAAACCACGTACAGTTGTCATGGACAAGAGTAAGGGAGAACCAGTGATCAGTGTTCAGGGAGAGGAGAAAAAGGAGGGAGAGAAGCCGGAGGACCAAGTGAAGAAAGAGGGCGAAGAGGTTGTAAAGGCAGAGACAGAAGAGGGGAAGCCCGCAGAAGGTGCAGAAGGTGCAGAAGGTGCAGAAGGGGCAACTGAAGAGAAGACAGAGGAAGAAAAGGAAGCTGTGAAGACGGAGGGCGACGACAAAGCTCGCTCTAGATCTCGGGGTACTTCATCGAAGAAAGATGACAAAAAAGATGTGCTAACTCTGGAAAGAATCAAGGAGGCGAGGCAGCGCGAGCTAATACGACAGAATAACCGGCGTATAAATAATCTGGAACGGCGCCGACAGAATGAGTTGATACGGGAGAGACAGAGACAGAGGGAAGTGCAGCAGAAACAAAGACAGGAGGCAATCAAACTTAGCAGGGAACGAGAGAGACTGAGGAGGGACAGGGAGATGCTGGAGAAGGAACGCATGGAATCGCAGAGGCTAGAACGACTACGCTTGGAACAGATGGAGAGAGAACGACTGGAGAGGGACAGGGAGGAGAAGAGGAGGCTCGACCAACTCCGAATACAAGAGGAACAGCAACGCCGAGCCACAAAGCGGGCATTTGATGCACGAGATAGAGACATGTACTGGGATCCTAAGAGACCCGCCCTTGGAGACAGAAATTATGGAGATAGAATTGATAGAGACCGTTCAGGTCGGGAAGGTGGCAGATACGTTGAAAGAATATCTCAGCAAGACAATGTAGGTGACACTCGCAGGGTAGTCGACAGATTTGACCGAGGAGACCGTCGAGGAGTGGACAACACGAGAGCCGACTTGGGCACCCGGGGTGGGAGAATGGATGGACGGGACATTGGAGGACGGAGAGATGCTGCACCAGGGAATGAACGGTCGGGCAGAGATCAGAGAAATATGGCCGCTGGTCGAGATCGTGGAAACGATAGAGTAGACAGGGCACCAGCGGCGCGCAATGACAGAACGGGTGACAGAGTTCAAGCCAGAGACCATGGGCGGGACACTGGAGGATCCAACAACTATAGAGACTCAAACCAACGCGACATGAGAGACCGTGGCACGGACAATAACAGAGCTAACGACAGGACCAGTAGCCGACAGAACGCAGGTTCCAGAGAAGGTCGATCTGACTTCAGGTCAGACAAAGATCAAAGTAATGCACTGGGAAACAGAGACCATAGAGATAGCCGTGGGTCACAGCAAGACATTCGGAGCTCTAGTACGTTTGCCTCACAGACCAACAGGGGCAGCAATTGGCAGGGCCAGGGTCGGAGTGGGGGCAGCCAGGGTATTCAGGAACGCAGCAACAAAAACTTCTCAAGGAACCAGACAGGAGGGATACTGAAAAATAATGGACCACAGAGTGGAGGAGGAGGAAACCAGGGATCGTGGGGTTCCGGGTCACAGAGAACAGACAATACACAAGTGAATAGACAGCCCGATAGATGGTCCGGCAGTTCAATAGTGCAGCCCGAGACTCGTCCAATAGCCTACCAGACTGTTGGTGCTCCACCTGGCATCATTGCTAATGTTCCTACGGGAATGTATGTTACCACCTCAATGGCACCAGGGGCTCTGATGATGGCAGCGCCCAATATACAAGGTCAAACTCGACAACAAGATCAAAGATTTGATGCTTACAAAGCATTGGGACCCAACTTAAGGAGATATTAGTGTTTCTATTTTACACAGTTTACTCGTACACTGAACATCAAAGTGAAATCAAGCAAATTAGTGTGTGAAATGACGAACTAAAGAGTTCTGCATTGAATTATTTCTCAAATGATCATGTGTAAATTGATTTTAAACATTAATATCGGAAATACCTACATCAACATACGGTTTGTGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF02037	SAP	SAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR003034	Domain	SAP domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034781	Domain	Scaffold attachment factor B1/2, RNA binding domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036361	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR051738	Family	Scaffold Attachment Factor and Modulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15683	SCAFFOLD ATTACHMENT FACTOR B-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0050684	Biological Process	regulation of mRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-