Gene detail

Detailed information of Ama00554 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama00554	C2 DOMAIN-CONTAINING PROTEIN 5	chr5	20447416	20744936	-

Gene Structure

More details in Jbrowse Sequence

CDS

Ama00554

ATGCCTGGCAAGGTGAAGGTGAAGGTCCTTGCAGCGAGGGGGTTACCCATCATGGACAGATCCACTGATCTTACTGATGCTTTTGTAGAGATAAAGTTTGGAAGTGATGTACAGAAGACAGATGTGTTTAAGAGATCCCTGAATCCTCAGTGGAACTCGGAATGGTTCAAGTTTGAGGTAGAGGATGAGGTTTTACAGGATGAACCACTCGAATTAAGGGTGTTGGACCACGATACGTATAGTGCCCATGATGCAATTGGCAAGGTGTATATAGACTTGAACCCACTACTGATGAAGGAGAGTCCGTCTGTCATCACTGGCTGGTTCCCTATTTATGATACAATGCACGGCATAAGAGGTGACTTAAGTGTGCTTGTGAAAATAGATCTGTTTAGTGACTTCAACAAATTCCGACAGTCTTCGTGTGGTATACAGTTCTACTGTACTGCAGAAGTACCGTCTGGTTACCGGCTTCAGTATGTGCATGGGTTTGTGGAAGAACTGGTTGTTAACGATGATCCGGAGTACCAGTGGATTGACAAAATTCGTACACCAAGATCATCAAATGAGGCCAGACAGAGACTCTTCTCTAAAATGTCAGGACAGCTTGCTAGGAAGATTGGTCTAAAGGTTCTGGAAATGGGCGGCGGCTCAGTAATAGGTTACAAGCAATGTTTTGACCTGGAAGGAGAATCTGGAATTGTTATTAGGGGCATCGGTACAGCTGTGACATTGTCCAAGCTGAGAGACCCACAGGTGTCCCCACTCGGAGTCTCACCAATGAAAGACTCTCCCGTGCCCGAGGAAATCCAGACGCACTCCTCCCCTCCACCAGCACAGAATGCAAGGAGCTCAACTTCACCTATGAAGGTGACTGGACCTCCTTCAGGACCTCCAAACACTAGAAGGTCGTCGGATTCAGATATGAGCACCCCACCTAGAGGTAACAGTTTGGCAGATAGCAGTGGGAGTGGCAGTGGTAGTGGAACAAAAACCTTCCCCAAACCGTGTTCACAACAGATCAACATAGAGCTCATGGAGTTCCCGTTGTTTACAATGACATCATTTCCTCCTGGTTTCATCAAACACATGGGTGGCGTGGTTGCTGCAAGGTCCATTAAACTGCTGGATAAAATACACAACCCAGAGGAACCGGAGACTAGGGATGCTTGGTGGACTGAGATTCGTACCGAGATACGCTCACATACCCGTGCCATGGGCTGTCATGCTGTCATTGGCTACTGTGAACTGACCTCTATCTGTGATGAAATAATACTGCTGTCGGCCACCGGGACAGCTGCAAAGGTAAATCTGAACTTGGACCAATATCAGGTACCACAAGCAAACCCACAACTTCTTGTATCAGCCGGGGACCGAAGCTTTGGACCAGAGAAAGATAGGGACCAGGGGAAGAAACTATTTGTGGATGTTAATCTAGCTAATCAGGTGTCACAGAGAAGTGGAGCCAGCTTGGAGGATGGGAGTCCAAGATTCAACTGTTCCCTATGCCATATACCCTATAAGCCGAGTTCAGCACCATTTCCCATCAACCTATCACAGTGCTCCTCTTGCAGAAGGAGATATGTTCCAGATGTGTTATTTACCACAATAAATCCCCCTGCAGAAATACAGACCTTGGGGAAAGGTGCATTTATACAAGCCAGAGTGTGCAGACCAAAATCCAACAGCAAGGCAGAAGCCAATGCTAAAGAAATAAGTGATATTCTGCCATTCCTGGAGTATGACCTTCATAATCAACTAATGAACAAACTCAAGATTCGAAGTATGAATGGTTTATTTGGACTCAAGATGCAGTTTGTTGTAGGAGAGAGCTTGCTGATTGGGATAGCATCTGCTACAGGAGCATACCTTTCCCCTCTGCCGACCCCTCCTGTCCCCAGATTGTTGGGACAGATCACGTCGGAGGAAGAGAATGTCGTGCTGCAGGAACTACAAATGAAACTGGCTGAACAGATACAGAAAAACAAGGACCTATATCAACTCAATGGCATTGATTTTTCCAGTCAACCAAGTCCACCCAGCGCTAATATCGATGACAGTGACGACGAGGGCTCGGAGTTGGAACTCTCGGCTGGTAATAAAGATACATTTGTTCTGGAGGTGGACGATACGAAAGATGAAACTGTCCAGGCTATGTTGCATGACACACCCCACCCACTGGGTATGGAACTGTGTAACACAGAGACATTTCCAGGCATTCAAACCCAGGCTCTTACCCATAACTTGCAGATGTTTACTCAAGTATACAGAAGAAAGATAGACCTCGAACAGCACATGAAACCAGATTTTAAGGAATTCTTTGATGGTGTATATAGGAGACTGTTCTTCAAGTTACGTAGAATGATTCCGTGTTGTTTGTGTAATCTTGTGTTCAATGTGAACGCTCCCGAGGAGGACGAGATTGAAGTGGTAGTCACGGGAACGTGTGTCGCCATCGAGTCTGCCAACAAGACCTACTCGGACACGCCTGTGTCGACAGCTTCAAGTAAACCTTTGCTAAAGCCAGCTAACTTATCGGTTGTTGGAGCCAGCGGGGAGAATGTTGATGATATGATGTTCCAAATGGAAGAGGTCACTGAAGGGTTGGCTTCATCTGGATCACATAAAGTGCCAAAGATTAGAACAGAAAGTATTAAGAAGAAACCTAGTCAAGTTTTTGGCGGCCGGTCTATACAGGGTATAGAGATTACACCATTAGCGTATGTGCCGGGAGCCAGAATAGAGCGATACATTGGCAGCTATAATTTCTTCTTCATACGTGAAACTACGTCCGTTAGAGAGGTGGGAGGGGTGTGCGGATTTATGCAGAAGTTTATTATGGAGGTGCTGGCCATTGTGCGAGCTCACGTATCGTCACTCGGAGGAAATGCACTGGTGGCGTACAACATAACACAATGTGTGCTGTTAAGTAATGAACACAAGAATCAGAGTCAATGTTTGATCAATGTGTGTGGAGATGCTGTTTATGCTGTAAAGGAAGGGGAGATAATCACAGTTGTTCCCGAATATGTGCGTAAACATAGTGACTCGCCTATATATGTGACGTGA

Transcript

Ama00554

ATTTCGTCTAATGAAATTACTATATTGGCTATCAGTCATGCAAAATAACCAAAATGGACGACATTGACTTGTAAAGTTTTACCATGAAATTTAAACGTTGATTTCTTGTATAATATTGTGTCAAGAGACGTTATACACTGGGCATGATTCAAACAACGACGTATGTTTGAAGGAATACAGGATGCCTGGCAAGGTGAAGGTGAAGGTCCTTGCAGCGAGGGGGTTACCCATCATGGACAGATCCACTGATCTTACTGATGCTTTTGTAGAGATAAAGTTTGGAAGTGATGTACAGAAGACAGATGTGTTTAAGAGATCCCTGAATCCTCAGTGGAACTCGGAATGGTTCAAGTTTGAGGTAGAGGATGAGGTTTTACAGGATGAACCACTCGAATTAAGGGTGTTGGACCACGATACGTATAGTGCCCATGATGCAATTGGCAAGGTGTATATAGACTTGAACCCACTACTGATGAAGGAGAGTCCGTCTGTCATCACTGGCTGGTTCCCTATTTATGATACAATGCACGGCATAAGAGGTGACTTAAGTGTGCTTGTGAAAATAGATCTGTTTAGTGACTTCAACAAATTCCGACAGTCTTCGTGTGGTATACAGTTCTACTGTACTGCAGAAGTACCGTCTGGTTACCGGCTTCAGTATGTGCATGGGTTTGTGGAAGAACTGGTTGTTAACGATGATCCGGAGTACCAGTGGATTGACAAAATTCGTACACCAAGATCATCAAATGAGGCCAGACAGAGACTCTTCTCTAAAATGTCAGGACAGCTTGCTAGGAAGATTGGTCTAAAGGTTCTGGAAATGGGCGGCGGCTCAGTAATAGGTTACAAGCAATGTTTTGACCTGGAAGGAGAATCTGGAATTGTTATTAGGGGCATCGGTACAGCTGTGACATTGTCCAAGCTGAGAGACCCACAGGTGTCCCCACTCGGAGTCTCACCAATGAAAGACTCTCCCGTGCCCGAGGAAATCCAGACGCACTCCTCCCCTCCACCAGCACAGAATGCAAGGAGCTCAACTTCACCTATGAAGGTGACTGGACCTCCTTCAGGACCTCCAAACACTAGAAGGTCGTCGGATTCAGATATGAGCACCCCACCTAGAGGTAACAGTTTGGCAGATAGCAGTGGGAGTGGCAGTGGTAGTGGAACAAAAACCTTCCCCAAACCGTGTTCACAACAGATCAACATAGAGCTCATGGAGTTCCCGTTGTTTACAATGACATCATTTCCTCCTGGTTTCATCAAACACATGGGTGGCGTGGTTGCTGCAAGGTCCATTAAACTGCTGGATAAAATACACAACCCAGAGGAACCGGAGACTAGGGATGCTTGGTGGACTGAGATTCGTACCGAGATACGCTCACATACCCGTGCCATGGGCTGTCATGCTGTCATTGGCTACTGTGAACTGACCTCTATCTGTGATGAAATAATACTGCTGTCGGCCACCGGGACAGCTGCAAAGGTAAATCTGAACTTGGACCAATATCAGGTACCACAAGCAAACCCACAACTTCTTGTATCAGCCGGGGACCGAAGCTTTGGACCAGAGAAAGATAGGGACCAGGGGAAGAAACTATTTGTGGATGTTAATCTAGCTAATCAGGTGTCACAGAGAAGTGGAGCCAGCTTGGAGGATGGGAGTCCAAGATTCAACTGTTCCCTATGCCATATACCCTATAAGCCGAGTTCAGCACCATTTCCCATCAACCTATCACAGTGCTCCTCTTGCAGAAGGAGATATGTTCCAGATGTGTTATTTACCACAATAAATCCCCCTGCAGAAATACAGACCTTGGGGAAAGGTGCATTTATACAAGCCAGAGTGTGCAGACCAAAATCCAACAGCAAGGCAGAAGCCAATGCTAAAGAAATAAGTGATATTCTGCCATTCCTGGAGTATGACCTTCATAATCAACTAATGAACAAACTCAAGATTCGAAGTATGAATGGTTTATTTGGACTCAAGATGCAGTTTGTTGTAGGAGAGAGCTTGCTGATTGGGATAGCATCTGCTACAGGAGCATACCTTTCCCCTCTGCCGACCCCTCCTGTCCCCAGATTGTTGGGACAGATCACGTCGGAGGAAGAGAATGTCGTGCTGCAGGAACTACAAATGAAACTGGCTGAACAGATACAGAAAAACAAGGACCTATATCAACTCAATGGCATTGATTTTTCCAGTCAACCAAGTCCACCCAGCGCTAATATCGATGACAGTGACGACGAGGGCTCGGAGTTGGAACTCTCGGCTGGTAATAAAGATACATTTGTTCTGGAGGTGGACGATACGAAAGATGAAACTGTCCAGGCTATGTTGCATGACACACCCCACCCACTGGGTATGGAACTGTGTAACACAGAGACATTTCCAGGCATTCAAACCCAGGCTCTTACCCATAACTTGCAGATGTTTACTCAAGTATACAGAAGAAAGATAGACCTCGAACAGCACATGAAACCAGATTTTAAGGAATTCTTTGATGGTGTATATAGGAGACTGTTCTTCAAGTTACGTAGAATGATTCCGTGTTGTTTGTGTAATCTTGTGTTCAATGTGAACGCTCCCGAGGAGGACGAGATTGAAGTGGTAGTCACGGGAACGTGTGTCGCCATCGAGTCTGCCAACAAGACCTACTCGGACACGCCTGTGTCGACAGCTTCAAGTAAACCTTTGCTAAAGCCAGCTAACTTATCGGTTGTTGGAGCCAGCGGGGAGAATGTTGATGATATGATGTTCCAAATGGAAGAGGTCACTGAAGGGTTGGCTTCATCTGGATCACATAAAGTGCCAAAGATTAGAACAGAAAGTATTAAGAAGAAACCTAGTCAAGTTTTTGGCGGCCGGTCTATACAGGGTATAGAGATTACACCATTAGCGTATGTGCCGGGAGCCAGAATAGAGCGATACATTGGCAGCTATAATTTCTTCTTCATACGTGAAACTACGTCCGTTAGAGAGGTGGGAGGGGTGTGCGGATTTATGCAGAAGTTTATTATGGAGGTGCTGGCCATTGTGCGAGCTCACGTATCGTCACTCGGAGGAAATGCACTGGTGGCGTACAACATAACACAATGTGTGCTGTTAAGTAATGAACACAAGAATCAGAGTCAATGTTTGATCAATGTGTGTGGAGATGCTGTTTATGCTGTAAAGGAAGGGGAGATAATCACAGTTGTTCCCGAATATGTGCGTAAACATAGTGACTCGCCTATATATGTGACGTGATAGAAAATGATTACAGCTACACCAAATTATGTGACGTGTTATATTAGGTAGCAGACAAAATGGTACGAGATGCTATTACAGTCTACATCCGTTATGTCAAAGTCGGTTATGTCGATTTCTCCCCGGTTATCTCGAAGTCGGATCAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008	Domain	C2 domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR037785	Domain	C2CD5, C2 domain	Interproscan
IPR038983	Family	C2 domain-containing protein 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37412	C2 DOMAIN-CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005544	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0010828	Biological Process	positive regulation of D-glucose transmembrane transport	Interproscan
GO:0031340	Biological Process	positive regulation of vesicle fusion	Interproscan
GO:0065002	Biological Process	intracellular protein transmembrane transport	Interproscan
GO:0072659	Biological Process	protein localization to plasma membrane	Interproscan
GO:0090314	Biological Process	positive regulation of protein targeting to membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-