Gene detail

Detailed information of Ama00028 in Archivesica marissinica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Ama00028	ALANINE RACEMASE	chr5	730056	768327	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Ama00028

GCTCAATGTACTATTCATGTAGATATGTACAGACAATAGGCATAGGCATGGTGTAAAATTGGGCGGAGCAAACTCGTAGTTGCAATGCAATGCCAATAAACGAATAACATAAGATATAAATATTATGTCAATCTAACTGAAAATGTCGGTTGTTAATGAGTATGCTATATATCGGTTAACATGTGTGAATATGTCATCATCATCGCAAGTATCGGTTGACAATTCATATCAGTAGTCATTTTTATATGTATACACTTTACATTGGTGCGTGATAATGCAGCTCCTAATGTAAGGACTAAGGAGTGTTAAACAGTATCTAATGATATATCAATATGTCAACAAGCTCCAGTGCACAACTGTGACGATACGCTAGTTCAGTTGTTGAATGAATACTTCCGGTACCAAGGACGACACCAGAACTTTAGGAAGAACGTATGGGGAAGGAAATGGACCGAGCGGGTCTAATGGCGGAATTTGCCCTAGCCAGGAGACCAACGTTCCTGAAAGTGGATTTGGATACGATACTGGATAATCTCCAAATACTGAAGAACCATCTTGCTAAGCATACAGAAATTATTGCAGTGGTAAAGGCGAATGCGTACGGCCACGGCGCGGTTACTGTGTCACGTTTTCTCGAAAAGCACGGGATCTCGCACTTTGCTGTTGCCACAGCGTTAGAGGGGGAGGAACTGAGAACAGCCGGGATACACTGCAATATACAAGTGCTCGGAAATGCATCTGAAGATGAGATCCCCACACTGTATGAAAATCGTCTCATACCGACGGTACCCGACGTCAAATTTTTATCGTCGTGGTTACATCATTGGCGGGAACGGCAAAGAATCACCCTTGGCGTGGAGAATAGACGACCCGCTGGTTGTGTTGTGATAAAAATAGACACCGGTATGTCAAGGAATGGGTGTCAACCGAAGCAGCTACGGTCAATGGTAGAGTTTTGTGATAACAACTGTATCCCTATCCACAGTATAATGACACATTTTGCCCAGTCCTGGGACGATCCTCACTTCACTCAAACACAAATAGACACATTCATGGAAGCAGTAGAACCGTATAGAATACGTGGTATAAAATTGCACGTGGCGAACTCCGGTGCCGTCTTGAACAAGGTCGGTGTTGACCTGGACTACGTGAGACCTGGCATCTCCATGTATGGGCAGTCGCCGGATACGAGTGAATACGGTATCAATAAAACTAAGGACCTTGGACTGAGACCCGCAATATCTTGGTATGTGAAGGCCAGCCTTGCAAATGGTGTCGAGCCTGGCCGAGCTGTTGGATACGACCAGACTTACAAGTGCACCCAGAAAGAGACGATTGCTGTGATTCCAGTAGGCTATGCAGATGGATACTATAGAAACATGTTCAGTAACGGTTATGTGACAACATTAGAGGGCATCATCTGCCCTGTGGTCGGTCGTATCTCTATGGACGCCATTACAGTCAAGCTGCCGGATGAAGCCAAGGCATGCCGGGAATTTCTCTTGATGACTGCTGACTTCAATGAAGTTAACTCGACAGTGGCTATTGCAAAAATTCAGGAGACTATACCGTACGAAGTGTGTACAAATCTTGCTAAGCGTGTCCCTAGACTATACAAGTTCGGTGGCGAGACACTGGTGGGAGTGTAGCTCAAGTGTCACCACTGACATCCCCGTGTAAACCCACACATAAACCTGTCTGCGATATTAATAGTAACATGTTCATCAGAATTCAAATTGATTATCCTCTCGTATAAACTACATTTATTTGCTCTGCACGTTAGTTCGTGTCCTGTATGGAATAGGATATGTTGCTCTCCACAGGCAGGACGAGTTGTGGTTAACGCGGTGTGAATATTATATTTATTTATGATGCATTAAAAATTAAAAGCATACATTCAAAGGCAACATATGCTTTCATGGTGATATGTTAGCCATATATTTGACATGTCTAATGTTCATGACTACGTATTTATGTCCTGCTCGTACCCTAGCATAGGATGTGATAGGCTCGGTGGAACTCTGATGGGAGAATGAAACAATAAAACCTGAATGGATGGTATGTCCTGCTCGTACTCTAGCATAGGATGTGATAGGCTCAGTGGAACTCTGATGGGAGAATGAAACAATAACACCTGAATGGTTGGTATGTCCTGCTCGTACTCTAGCATAGGATGTGATAGGCTCAGTGGAACTCTGATGGGAGAATGAAACAATAACACCTGAATGGTTGGTATGTCCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00842	Ala_racemase_C	Alanine racemase, C-terminal domain	Domain	Interproscan
PF01168	Ala_racemase_N	Alanine racemase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000821	Family	Alanine racemase	Interproscan
IPR001608	Domain	Alanine racemase, N-terminal	Interproscan
IPR009006	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR011079	Domain	Alanine racemase, C-terminal	Interproscan
IPR020622	Binding_site	Alanine racemase, pyridoxal-phosphate attachment site	Interproscan
IPR029066	Homologous_superfamily	PLP-binding barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30511	ALANINE RACEMASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006522	Biological Process	alanine metabolic process	Interproscan
GO:0008784	Molecular Function	alanine racemase activity	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0030632	Biological Process	D-alanine biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-