Gene detail

Detailed information of Actinostola_20530 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_20530	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED	scaffold95_size653213	270799	312941	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_20530

ATGCCTTCAAACGTTGAAATCAAAGCCAAAGTTCACGATCTCGAAAAGCTGAAGCTAAAAGCTAAAGAACTGAGTGGGGAAGACGGTACCCTGATAAAGCAACAAGACACATTTTTCAACGTACCTGATGGAAGGTTGAAGTTGCGATGCCTTCAAGAGAAGCCTTCACAGTTAATCTATTATGAGAGGTCAGACTCAAGTGGGCCTAAACTTTCTAACTATTACATTGCAACTACCAGTCAGCCAAAGGGGATGATTGTTACTCTTAAACATGCATTAGGGGTCAAAGGTCAGCCGCTTCTTGACGCTCGCACCATGGGGGTGTCACGCAAAGAGACCCCTGTTTATCAAATTGCTTACAGTACTTTTTATCAAGGTGTTGTCAAGAAAGAGCGTTACTTGTACATGGTGGGACAAACCAGAGTACATGTAGATCATGTAGAAGGCTTAGGAGACTTTATGGAGCTTGAGACTTATTTAAAGCCTGCAGAGTTGTTAAAAAAGTGTTTAAACATGGCGAAAGTTGTCATCTCTCCATCGGTGCATAATTTCGCGGACATCAGACCCGTTTCCAGAGGGCTGTCCTTTTCCTCACGTCCAAAATCGGGACTTTCAGCTGGACACTCAAGACCACAATCGGGTATAAATACAAGAGCAGAAAAACTCCTAGAGGGAACTCCTAGAAGCGAGAGGTCTCCAACGTCTGTGGATATTCCTTTGCCGGTTTCTGGAAGGCGTTCTTTATCTGTATCTTCGTTATCAAGCACTGGTAAGTCAAACGTTTACTGCACTTTTGCTTGTTCCAAGTCTCCCAATCCAAAGCTCAGTGCCATAGAAGTGGAGTCAATTATGAGAGACAAAATACGAGTCAACTTTGCTGACATAAGACAGGCTTTTCAAACTCTTGATGCAGACAGGAACTTGACTGTCACACAGTTAGACGACACGCCGGGGGAATTCAGAAGAGTATTAGAATCATTTTGTTTCCCTCTTTCTCAAGAACAGTTTCACCACATCATGAAAAAGGCTGTTATAAACAGAGATGGCACAGTTAATTATCTAGAGTTCTTGGAAAAACTGCATCTAAGAGGAGGGACGCCAGAAGGAATGAAATGGTTGGGTAGTTTACACAGGTTTAACCAAGCTAAAACCCCTGAAGAACAGCCCTTTGATGATATTGAGAGTAAAATCAAAGCCAAGATAAGTGGTCAACTTCAGAGTGTGTTAAAGGCATTGAGGCTCTTTGATTACAACAGAGATGAACAGATCCAAAGACATGAACTAAGAAGAGTTCTTGAAAACTTTTGTTTTAAGCTGACAGAGAATCAATTTGACAGGTTATGGTGTAAATATGACATGACAAGGAATAGCAACACTCTAAACTACATGGATTTCCTACAAAGACTTGGTGTTGATACCAAGAAAAAGACTGTTCGCCATCATTCCAACAAAGCTACCCAAGGCAAGGGAGGAGTCACTCAGGAGAAGGTTCGATTTGTGGCAACCAATAAGAGGCCATGCTCCAGTAGTAGTAGCAGGGAGGGGTCACCTGCACCTGTGCCTGCACCTCCATCTATCAAAGACTTGGAAATGAGACTTAGGAAACTGATGATTGAAAACTACCACAACATAACACGTGCATTTGTGGCCTTTGACCGACGTGGAGATGGTTTTGTTACACTCAGTGAATTGAAGCGAGTTCTGTCACACTTTGTTTTCCCAATGACTGATGGTCTCTTTAATGTACTAATGCAAAGATGTGGAATAAAGGCCAATCATAAAATTGCCTATGAGCAGTTTCTGAATAAGTTTCAAGAACCAAAAACAGATAGGCATGGTCAAACTCTTCCACTTGGATCAAACCACAAGGTCAATCCAATCCGCGAAGCTGAGATTCACCCAACTACAGAAGATATCTGGAAGTTCCTGTTCTCCAAAGTGACTGACAGCTTTTCTTCCATCAAGCAGGCGTTTCTTGTTTTTGATGATAATAAGGATGGTCGTGTGACTAGGCGTGACTTCCGTAGAATCCTAGAAAGTTTCTGCTACAGGATGACAGAGGAACAATTCCATGAGCTGATGGCTAAAATTGATCCTCGCAACAATGGTTACATATCGTATCAGGAGTTCCTGGAAAGATTTGAGCATAGAGAAACAGAGGAAGGCCATCCATGGCTTATTGGTGATCATTCTCCAAAGAGCATCTCTCCACCTGCAATTCTTGCTTGGTCTACTGTTGAAGACATCCTTCGTGGTAAGATTATGGAGAATTGGAAGACCATTGCTAGTGCATATATCAGTATAGACGACAACAGAGATGGCTCGATATCTAGAGAAGAACTCAGAAAACTCTTGGAGAAGTATTGTCTGCCACTCTCAGACGAACACTATGAAATGCTTTGGGGTCGTTGTGATCTTAATGAAGACAATTCAGTGGATTTTCAAGAGTTTCTCTCCAATTTGGGAGTAGACATTATCAGTGGTGACATCAATGGTATAAGTACACGCATTCACGATGAGAGCGAAGCCAATGCTCATTTCATGAAATACAACCAGTATCACCGACAAGAGGCTGCTTATGACCGAGCAGTTGATCTGACTGGACAGAAGTCAGCAGACAAATGCATGGATATACTAAAGGAACACATATCTCAAAGATCACCAGATATTCGAAAAACATTTGTTAAATTTGACAATGATGGCGATGGGAAAATATCTAGGAAAGAATTCCGCTTAGTTCTCGATAGTCTTGGTTTATACACGACTGACGACCAGTTCCGCATACTAAGTGCAAGACTTGGGTTTCACAAAGGCAAATTGTCCTACCGAGACTTCTTAGACCACTTCCAAGACAGAAGATCATTGGTGTCGGAGAAAGAGCTCCTGAATATCCAAAGCAAAGCCTGTATCACTAGTGGAAACTGCAAGTACATGTACTGCGCCACACACAATCAGCCTTTACCATTAGAGGAATCCATGACGGCAGAGGAAGTAGAGGCTAAACTTAAAGCAAAATTACGGGATGGATTCACTGATCTCCGAGTGGCATTCCAGAAAATCGACTTTGACAGAAACGGTCTTATTACCAGACAAGAATTCCGTCGTATTTTGGATTCGTTGATGTTCATGTTGTCAGATGAGGAGTTTGAAAAGTTGATGAAACGGTTCGACATGAAAAAGGGAGACAAGCTGAACTACAGAGAATTCTTGAAGAGGTTTGAACATGTGGAAAAGATTGAAGAAGGACACCCATGGCTGTATTCGAACCACTTTTTCAATGAAACTAAAGATCTTCAGTACCTCGATGCAGACTATGCAGATCGCTTACTCAAAAGAAAGGCTTTGGAACAGATAGAAGATATTACCAAGGCGTTCCTTGCGTTTGACCAGGACGGTAATGGGGTTGTGACCAAGAAAGAGCTACGAAAAGTCCTTTACAAATACCAGATCGCACTGACTAAAGAAGAATTCAAAAAGCTTTGGGAAAAATACGACACAGACAACAATGGCCATATTGACCATCAGGAATTTATCGCACGTCTTGGTGGCGAGTTCGTACCGGGTGATACCCATGGCCCTAGTACCCAGATCACCCACGGCAGCTACAATCAGATGAAGAGTTTCCATGATGCACAACAGGCCATTCATGAGAACGCAACACATAACCAAGCGCAGGCTGTGTCCTTTTTATCAGCACTGGAAGTAGAACAACGTCTCAAGGATCGATTTCGCGACGGATACGAAAGCTTACGCAAGGCATTTGAGGCAGTCGACGTGAATAGGGATGGCTACATATCAAGACAAGAACTACAGCAGATTTTATTTGATTTTCATTTCTTCCTTGATGAGGTGCAACTCAACATACTGCTAGAAAGATGTGGACTAGCAATTCGTAACAAGCTGTCGTACGAGAAATTCCTCAGCGCATTCGAAGACCAGCGGTATTCGGGATACGGTCGTGTGACCCTCGACACTCCGAACAAACAATGCACCAGTCCAGTTGTGTTTGAGAACCATGAATCACTAAACCCAGATCAAGCTATCGCTAAGCTTAGAAAGAAAATCAGCAGCAACTATGATACAATAGTGAAGGCGTTCCATGCGTTCGATGATACTGGCTTGGGTTTCATATCAGCCAAAGATCTTCACCAGATTATCAACGCATTTTGTTTTGTGATGACAGATAAACAGTTCAGGGCGCTGCTCAAGCAAATTGTCATCAACAAAGACGGCTTACTTTCGTACGAAGACTTTTTACACAGTTTTCAGCAAACTGACACTGAGGCCAGTAGAAAGTGGTTGGAGAATCTGTTACCATCGCCTACCAATGAGCACCGCTCTCCTCTACCAAAGCACGGTATGACGGAACAGGACGTAGAAACAAGAGTCAAGGAGGTGGTGATGGCAAGGTTTTACACTCTTGCTAAGGCTTTGACAGAACAAGATACTGGACGAACTGGTTTGATAAGTAAACGTTCTCTCAAAAGAGTGTTGGATCGTCACGTGTTCCGAATGAATGAAGAACAGTTTGACCATATATGGCAAAGCCTGCCCAATGCCCCGGATGACAGCGTGGACTATAGAGAATTTCTTAAGAAGTATTCATCAAGGACTAACATCACAAGGGCTTCCTCAGCTACCCCGCCCAGAACACAAGAACGAAAGTCCTCCCGCGAATCTCTGCTATCACCAATGATGTCACCAAACAGGAACATCTCCCCAGAAATAGTGACTCCGCCCATGAGCGCCAGTGACGTCGAGAAGAGACTCAAAAACCAGGTTTGTCGGTGTTGGCAGCAGCTACAAAAGTCATTCAGAAACACAGACCACGACAACACTGGCACCATATCCTTTGAACAACTTAGGGATATCTTGTACCACCATTCGATGGATCTCACACACAGCGAGCTGTTAGCTCTGTGTCGTAAACATGACTCAGATGGTAAAGGAAGGATTATTTACAAGGATTTCTTACGGCATTTTGTGTTGTCAATGAAGTCAGAAGAAACGAACCAACTAAAACGAGCCAAACTGCAGCCAACTAAAGTACCGTCCAGTCCAGGGTTCAAGAGCGATCAACTGCTTGAAATCATGGCTACCATGCGCTCCAAGGTCAGGGAAGACTGGAAGAAAATGAGACGAGCATTTAGGGCTGTCGACACTGAAGGCACTGGCAACTGCTCGCCATCAGAGTTCCGTCAGATGCTAAAGCGATTTCATATCGACCTAAACAATGAAGAGTTCTTTCACATTTACTCCTACTACGACAAGAACATGCTGGGAAAGATTTCCTACAACGAGTTCTTGAGAGCGCATCTCGGATAG

Transcript

Actinostola_20530

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01928	CYTH	CYTH domain	Domain	Interproscan
PF08976	EF-hand_11	EF-hand domain	Domain	Interproscan
PF13202	EF-hand_5	EF hand	Domain	Interproscan
PF13405	EF-hand_6	EF-hand domain	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR008173	Family	Adenylyl cyclase CyaB	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR015070	Domain	DJBP, EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR023577	Domain	CYTH domain	Interproscan
IPR033469	Homologous_superfamily	CYTH-like domain superfamily	Interproscan
IPR052603	Family	EF-hand calcium-binding domain-containing protein 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20875	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-