Gene detail

Detailed information of Actinostola_20448 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_20448	FAS-ASSOCIATED PROTEIN	scaffold93_size655475	475670	480965	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_20448

ATGGCGGCGAGCAGAAGTGTTCAAGAGGTTTGTGAGTTTCTGAAACGCCGAGACGTTGAAGAGGAGGTTATATCCACTTTTGAAAGGGAAAAGTTTGATGGTGAAGCTGTTCGATACTGCGCTGACACATCCTTGAAAGAACTTGGCTTGACCGCTCAGGGGGACAGACTTGCACTAAAGGCCTTTTGTGATGAGAAACCAGCCGATGAACGAAAACTCACTTTATTGAAGCAGTTGAAACAGAGATGGAATAGTACTAAAAAAGTCGACGGATCGAACCCGAAACCTAAAAACAAAGAGGTTAAAACCAGGCGTGTTATGCTAGGTTGGATGAGATATGATAAAAAACCTGGTAGATATGTAAGAGTTTCTCTCACAAAAGGAGGTGGAACAAGAAAAATGGACTTACCTATAAACTTTTCAAAAAATGATGTCATAGAATATGCAAAAAAGGTTTTCTTCCCAAGTAATGAGGATCTCCAAGGAAATTTCAGCTTTGACCTGGCCAATTTTAAGCAATCAAAAGTAGATACCCTTACAGACACAGATGGGGAAGTGCATGAATTTTCAGTTGGTAAATACTTTGAAGTCAGCAAAACTCATCAAATTAATTTATATTTGATGACAAGAGAACTACATGTATGTGACACTGATGATGAGGATGATTTTGAACAATCTGTATTTGATACAAACACCTCTACTGAGAAGTCCCCAGTTCATACTACACGTCTGAGTAAGAACTCTTGCACAGCAGTTACTGTGGATACTTTGCCATCATCTGGAGGACACCAACATAATTTATCACTTATTGGTGACACTGATGATGAGGATGATTTTCACATGTTGAAATCTGTATCTGATACAAACACTTCTACTGGAACTCCCCCAGTTCATACCACATATCTGAGTAACAACACTTCTGCAAGAGTCACTGTAAATACTCCTCCATCATCTGGAAGACACCAAAAGAAATCATCACCTATTGGTTCTTCATACGAAAGAGAAATGATAAAACATGAGCAAGATGCAGAATATCAAGCAAGTTTAAAGATAGACCAGGAAAATCAACAGAAGAAGTTGACAAGTGAAGTCAGTTCTGCAAATCAGAAAGCTCTACAAGCTGCACGTCTTCAGAGAGTTCCTCCCGAACCTGCTCTTGCATATATTAAACAGCTTAAAGTATACATAAGACATCCATCGAGGGGCCTTGTATCACGTGCATTTCGTGAAGATGAGAAAATGATGTCTGTCTATGATTGGTGTGGATCATTAGAACCTGTTCCAGAGCACTTCAGCCTGTGCACATCACATCAAAAGATTGTTTTGCCTCAAGAGCCTATAATATCAGTCAAAGGAATAATGCTATATGTTCACGTTCAAGAAGAACCTCAAGAGCTAGTTGGAAAAGACACAGAAGTCACATTCAAAGGTTTTGGATGGTCTGATGAACATGGAATTGAAGATGACACACTTCCACTTGCTGATAAAGAAATGTTGACACATACATTTACATGTACCTCTTCAGATTATTCCATTGAAAAAGTTCAAGAAACACTGCCCAAGAATATCATGGAGGTAGATCATACAAGTACTATCAGTGATGATGATGGGGAGGGATCTTCATCTTATCAACATTACTTACAAAGGGAAAGCAGTTTGAGTGCATCGCCTGGAATGCGCTTCAGACAATGGGTAAATGAGGTTTTTGAAGCAAGGTGCGAAAGTGAGGGTGAAAACAACGATGATCCTGAAGATTCAGATGAGATCACTGAAGTGAAACAAGTAACAGTCAAGCGAAGCACTATTCTTCATGATGCTCTGGAGCTATACTGTGATCCCCACATTGTTGAGTGTAAGCTAAATGTCACATTTAAAGGAGAACAAGGGATTGACTTTGGTGGTGTGACTGAAGACTTCTTTTGTTCCTTTTGGGAGGCCGCTTTTGCAGAGTACTTTGAGGGAGATGTGGTAAAGATTCCTTTGGCAACTCCAATAAAAATGTCTGCTATTAGCAATTCCATTTTACCAGCACTTGGGCGCATTCTAGAACACGGTTGGAGACTTACTCGAAAAATTCCAGTAAGGTTTTGTGAAGCTAGTTTTATTGCTTTGGTGTATGGTGAGGAAGCAGTACCAAATCAAGTCCTAAAGAGATCTTTTCTCTGGTACATCAACCAGTTTGAAAGGGACATTCTTTGTTCTCTTCTAGAAGGTGAAAAGGTAGCCGATTATAAGAAAGATGCAATATTTGGCCTTTACCAACGGTTTTCCATGCAGTGTTTGCCAGCCAAAACAGAAGAAGCATTAAAGGAGCACATTATCACAATGGCAAGGGCTGAATTTGTCTTCAAGCCAATGTTTTTTCTATCAGCTATGAGGCGGGGTATTGGAGGAGATAATTTAAAGGCACTCCAGAAAGAACTTCCTATTGATAAGATATCAGAATTGTATGATGAGCTCTCACCAACATGTGAAACGGTCTTGCAGAAATTAAAGAAAGGATCTGAAGACCTAAGGCTGGAAGAAGTACGGGTATTCAACTTTTTAACCATTTATGTGGGAAGCATGGACAGCAACCTTCTTCGAAGATTTCTTCACTTTGTCACAGGGTCCACAGCAACCCCACGTAAGCCAGGCATCAAAGTCTGCTTCAATGGTGCACAAGGTCTGAGCCGTGTACCTTGTGCCTCAACCTGTAGTTCCACATTAACCATTTCTACAACATATGAAAGTTTTGCTGAATTCAAGAAAGAGTTTAACATGGTCCTTGGAAGTGATGAAGCATTTGAAATGAATGTGCCTTAA

Transcript

Actinostola_20448

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF07647	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569	Domain	HECT domain	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR050730	Family	UBX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-