Gene detail

Detailed information of Actinostola_20401 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_20401	PHAGE INTEGRASE-RELATED	scaffold92_size655599	607823	641014	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_20401

ATGATCTTCTACGCTGGTACTGGTAGCCTGTTGCTGAGAGATGCTGACTCTATAACGCTGTTTGATGTCCAGCAAAAAAGGTCTTTGGCATCGGTTAAAATCAATAAAGTACGCTATGTCATTTGGTCCCCCGATATGTCCCATGTTGCCCTACTCAGCAAGCATGTTGTTGTTGTTTGCAATCGTAAGCTTGAATGCCTGTGCACAATCCACGAGAATATCAGAGTGAAGAGTGGTGCTTGGGAGGAATGTGGTGTGTTTGTTTACACTACTAGTAATCATATCAAGTATGCATTAACTAATGGCGACCATGGAATTATTAGAACATTGGACTTGCCTATCTATATCACTAGGGTTAAGGGAAGCAGTGTGTACTGTCTAGACAGGGAATGCAAAACTAGAGTACTTGGAATTGATCCTACAGAGTTTAAGTTTAAACTCGCTCTTATCAACCGTAAATATGATGAGGTGTTACACATGGTTAGGAATGCTAAGCTTGTTGGTCAGTCTATCATCTCTTACTTACAAAAGAAGGGGTACCCTGAGAAGAATCTTAGAGATAAATGGCTCTCCAACCTAGAGAAAACCAAGAAGCCAGGCACATGCAAATCCTACCTTGCATCCCTGTCTCGATTCCTGCGCTTTATCGTGGTTGAGAAACCTGAAGGGTTAGAGGAATGTAAAGAGGATGCAAATAAAATTAGGGAGCAAGTCCAAGAGTGGATGTGCAGTATGAAGGGTCCAGTAGCGACACGCAAATGGGAGAAGTTGATGGAGGACCTGGAGAAATTAATAAAGCCAGAAGACATCCAGAAGTTCGATAAGTGCTATCATGCAAGATCAGCAGTGTCCACCCTTGGCAAATGCATGGAAAAGCATGCGCCAAAGACTGCAACACAAGCTGACTATGTCCACGTCCGAGACTATATCATCACTCGTCTGTGCTTGGAAAACGCCTGCCGAGCAGGTCCGATTGCGAACATGACCCTGGGAGAGCTTAGAAAGGCAAAGAAGGACAACGATCAAATGGTGGTCACCGTGATGAACCACAAGACCCTGGTCTCTCACGGGCCAGCGAATGTTGTACTAAGTCCGATGGTACTGAAGTGGCTACAAGCGTTTATCACCTACATGCGAAACCACTTAGCTGGAGCAGGCACCAGTGACAGCTGCAAAATCTTTCTCAGCTGGTCAGCTAAAGAGATGAGCTCTTCAATGGTATCGGCGCAGCTGAACTCCTGCTGGCAGAAAGCAATGGGGAAGCAGATGGAGCGGGTTGCTCTTCATTTTGTGAAAGATGAGAAGACAAGATTTGGTCTAGCACTGGAGTGTGGTAACATTGAGGTTGCTTTAGAGGCAGCAAAAGCTTTGGATGACAAAGCATGCTGGGAAAGATTGGGTGCTGCTGCTTTGAGACAGGGGAATCATCAGGTGGTGGAAATGGCTTATCAACGAACCAAGAACTTTGACAAACTCTCATTCCTGTACTTAATCACTGGCAATGTTGAAAAACTACAGAAAATGCAGAAAATTGCTGAGATTCGCAAGGATATGAGTGGTCAGTACCACAATGCTCTGTACACTGGTGATGTCGAGGAGAGAGTAAAGATACTCAAGGCACTTGGACAAGGACCACTGGCTTACTTGACTGCAGCCACTCATGACCTGACTGCGGAAGCTGAAGATATCAAGTCAACCTTTGAACTTGATGCCGACATGATTCCAAAGGTCAATCCCAGTGCCAAACTACTGCAACCTCTTGTTCCAATTCTACAAAATGAAGGCAACTGGCCTCTTCTCACTGTCAGCAAGACATTCTTTGAGGGTGCCATGTCTGCCAAAGGTAAGACAGCTGGTGGTGCCTCTGCATTGACTGCTGTGGATGACGTTGGTGAAGGTGCAGGAGAGGGTTGGGGAGAAGATGCAGAACTAGTCATAGATGAAGAAGGTGGCTTTGGTGAAGGTGACGGTGCTGAAGGCGATGACGAAGAGGGTGGTGGATGGGATGTTGGTGATGATGACTTGGAGCTCCCAACTGATCTGGATGTTGGCGGTGGTGCTGTCCCATCGGGAGAAGAAGGATACTTTGTGCCTCCAAATAAGGGCACCAGCCAGGCCCAAATATGGTGCAACAACTCTCAGCTTGCCGTGGACCATATTCTTGGAGGGTCGTTCGAGAGCGCTATGAGGCTTCTTCATGATCAAGTTGGAGTAGTGAACTTTGAGCCATTTAAACCACTATTCATGTTGGCATACTCGCGCTCTAGAACTGCAATCATTGCAGGCCCTGCACTACCGAACCTGTTTGGATATCCACACAGAAACTGGAAAGATGCAGGTGCACGTAATGGGTCTCCAGCAATTGGTCTCAAGTTGAATACTCTAGTGCAGAGACTACAGGCTGCCTATCAGATGACTACAGGAGGCAAATTCCAAGATGCTGTTGTGAAATTCCATGATATACTCTTGAGTATTCTGTTAGTGGTAGTGGACACCAAGCAAGATGTAAGTGAGGCACAGCAACTTGTGGGAATCTGCAGGGAGTACATCCTTGGCTTGCAAATGGAGTCCAAGCGAAAAGACATGCCAAAGGTAGGGAAACGTGAGCTGACCAGTAATCTTGAAGAACAAAAGCGTATTTGTGAGATGGCTTCATACTTTACTCACTGTAGCCTTCAACCCGTGCATCAAATTCTTACTCTCAGGACAGCTCTTAACCTCTTCTTCAAGCTTAAGAATTATAAAATGGCTGGCTCATTTGCTCGCCGATTACTGGAGCTAGGACCTCGACCTGATGTAGCCGCACAGACTCGTAAGGTTTTACAAGCTTGTGATAAGAACCCCATAGACACTCATCAACTACACTATGATGAACACAACCCATTCGCTATATGTGGCTCGTCTTACAAGCCTCTTTACAGAGGTAAACCACAGGAGAAATGCCCTCTCTGCCAGACCAGTTACTGTCCAGAATTCAAAGGCACTGTCTGTGAAATCTGCAAGGTGTGTACACTAATACAATGCAATCAACTCTGTTTCAGTGTGTGTTTGTTTGCTGTGAATCCATGCTCGAGAATCCAGCGGAGCTCTTCGGCACGGGCTCGGATGAAACATCACCCTCCGAGCCCGCTACGAAAAGCACCGCTGAATTCTCGAGCATGA

Transcript

Actinostola_20401

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04053	Coatomer_WDAD	Coatomer WD associated region	Repeat	Interproscan
PF06957	COPI_C	Coatomer (COPI) alpha subunit C-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006692	Domain	Coatomer, WD associated region	Interproscan
IPR010714	Domain	Coatomer, alpha subunit, C-terminal	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR047312	Domain	Coatomer subunit alpha, WD Associated Region	Interproscan
IPR050090	Family	Bacterial tyrosine recombinase XerC/XerD complex	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30349	PHAGE INTEGRASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005198	Molecular Function	structural molecule activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan
GO:0030126	Cellular Component	COPI vesicle coat	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-