Gene detail

Detailed information of Actinostola_19877 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_19877	DNA POLYMERASE I	scaffold854_size200626	71552	83188	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_19877

AGTCTTGGGATTGTTGAAGCACAGAGAAATGATGAGAAAGAACAGAATACTGGAAAGTCGAGGTTATCAAAACGTGGAAGTTCAAAGTCAAGTGAGAGCGACAGTACTGGTAGTAGTACTAGTAGCATTCTAGAGGTTTGCCCTGGCAGTGATAGTGATGTACTTAACCTTGCGTCATGGGGGCTACCACCCTCGGTATTGCAGCGATATAATGATATGGGTATTACACACATGTTTGAGTGGCAGGCAGAGTGTTTAAGGACTGGAAATGTGCTTAGAGGAGGTAGAGTATTAATATTACATAATTATGTGCACAAGAAAGTTATTTTCATTATCTCTACCATCAGCATCATAATCGTTATCTCCACCACCACCACCACCATCATCATTATCACCATCATCATCATCTCCATCACCACTATCATCATCATCATTATCTCCATCACCACTATCATCATCATCATTATCTCCATCACCACTATCATCATCATTATCTCCATCACCACTATCATCATCATCATCATCTCCATCCCCACTATCATCATCATCTCCATCACCACTATCATCCATCATTATCTCCATCACCATCATCATCATCACATCCTCACCACTATCATCATCACCTTCGTCATCATCATCATTATCACCACAACCATCATACATTGTGTCACCACTATCATCATTATCACCACCACCATCATCATCATACACATAATCATTATCTCCATCGCCATCACCAACATACTCCTCCTTGGCTTTGTCATCATTATCACCACAACCATCATCATCATCATCTACATATGTTATATATTCCAGAAATCTTACGTCCATATTTTTTCTGAAATATATATAGCAACTGAGCCTCCAATCCAAATAGTCTGCATGAGTGCGACCTTACCCAACCTAGACATGCTCGCTCGTTGGCTTGCCGCAGACGTGTACTTCACAGACCACAGACCAGTCCCCTTGACCGAGATGGTCAAAGTCGGTCCAACTATCTATGACAACACTATGAAGAAAATCCGGGACATCGACATGACGACTGCCGTTGCCAATGACAACGATCACGTGATTCCACTATGTAAAGAAACCATCACAGGGGGACACTCTGTGCTCATTTTTTGCCCGACGAAAAACTGGTGCGAGAAGCAGGCAGAGGCAATTGCTCGCCATTTCGCCACGATCGGAAATGCTGCTTTAGCAAGAAAAAGTGACAACAGTTCTCATAAATCGGGCTTCGTGAAAGCGTCGGATTTAATCGCGTTTGACTACGAAGGCATCCGAGAGGTCTTCGAGCAATTAAAACGTACGCCTGTCGGTCTGGACTCGGTTTTGAGGAGGGTTATACCGTACAGTGTAGCGTACCATCACGCTGGGCTCACTGTAGACGAGAGGGACATTATTGAAGGGGCGTTCAGACAGGGGACCATAAGAATACTCGTAGCAACGTCTACTTTATGTTCAGGTGTGAATCTTCCCGCTCGCCGTGTTATCATACGTACGCCCACCTTTCATGGTAAGATGATTGACCCTTTGGTGTACAAGCAGATGGCTGGACGAGCGGGTCGTAAGGGTGTCGACGAGCTTGGTGAGAGTATTCTGGTGTGCAAGACGACCGAGCGACACAAGGCAACGACACTGATGAAGAGCGAACTGAAACCTGTGCAAAGTTGTTTGCTGTATTATTTTTTCTCTAAACAAGTGAAAGAAATGAATGGTGGGATGAAGCGAGCGTTACTGGAGGTCATATCAAGTGGTGTGGTCACAGGAATGCGTGACGTAGAGCGTTACTCTGCCTGTACGTTCTTTGCCTCCTCGTCACACGAGAGTGATACTGATGGTACTAAGTGCGTAATTACTGATACTATAAAGTTCTTGGTGGATAATGAATTTATTCGCGTGCAAGTGACCAAAGACAAGAAAGCAGATGAAGACAAGGTACGTTTGTGCGGGCACGTCTTACGGGACGCGCACAAGGAGCCCAACATCATACATTTGTGCGCACAGCACAGAGAGCCCAGTACTCGCGCGCTTCTCGTAAAGCTGTCGCTTTTATTCACGAATATTTTAACGAAACCTTTTCAGGAATCAGAGGCAGCGTCGTCTCACGAAAGGTACGTGCCCACCCAGCTTGGCGCAGCTACAGTAGCCTCTGCATTGTCACCCGACGAAGCCTTGGTTGTATTTGGTGATCTACAGCAAGCCAGAAAATGCTTTGTGTTGGAGAGTGAACTTCATATAATGTATCAGGTTACGCCCATATATGTGGAGACACAATGGCCAAACCTTGACTGGAATCAGTTTCTAAGTATATGGGAACGCCTGCCGTCCCACATGCGTCGCGTGGCTGACATTGTAGGTATCCAGGAAGTCTATCTCTCACTTGCATCACGAGGAAGAATACCAACACGAACTCCACAACAGAGACAGCAACTCAGGGTCCATCGACGCTTCTTCGCCGCCTTGGCGCTACAGGATTTGGTCCACGAAGTTCCTTTGAACGTCGTGGCGACACGATACGGCGCTACACGCGGAATGGTCCAATCGCTGCAGAGTTCTGCTTCAACGTTTGCGGGGATGGTTACAGTTTTCTGTCAGAAACTCGGCTGGATAAACCTCGACCTTTTGCTGTCACAGTTCCAGAGCAGGTTGTCATTTGGTGTGGAGAGAGAACTGTGCGACTTGGTCAGGATTTCGGTTTTGAACGCTGCGCGTGCGCGGATGCTTTATACCGCTGGCTTTCAAACCACAGCATCGCTGGCGTCGGCAAAACCGGAAGACGTCGAGACAGTTTTGAGAAACGCTGCACCGTTTGTCAGCGAGCGCAAACACCACGGAGAAACCGATGTAGAAGTTCGCCATCGAAACGAGGCGCGCGTGATTTGGGTGGCGGGAAAGAGAGGACTCAGCGAGAAAGAAGCCGCAGTCTTGATCGTGACAGAGGCGAAACAACACCTTAAAGATGATGTCGCTCAACTTGGCATTCATTGGAAAGCAACCGTACCGGAAGTGTCTATACCGGAAGTGTCTATACCGGAAGTACCCGGGACTTCAATCGGTCTTAAAGGTCAGGGCACTCTATCACGTGATAAAGATACGACTGGAAAGAAGCGAAGATACTCGAACAGACGAAAGTTGTCGGGATCTTATCGGCAGCGTAAATCGCCTCCTCTACGACGAAGTTCAAGGTCTCCAAACAACAACGAACTTCCAGTGAGTAAAGCTAAAGATGAGGAAGACAGACGTGAGACTACCGTGACTACCGCGAGAATGCGTGACATAGAGAAGCACTCCCTCGTTACCAAGGGGTCTGATGGAATGAGTGATTTGGGTAGTGGGAAAGATGTTGCTATTATTGATTATAAAGCTCAGAAAAGTAACGCATTATCAACATGTCTGGATGGAAAGAAAAAAGGCGTCACGGAAGTAAATATGGTGTCAGAAGCGGGACGAGCAGGACTGTGTCAAAAACAGCCTTTACAAAAGGATCAAGAGAGATTAACACGTGGCGATGACATGAGACCACCTGATGTCAACGTGAATAATGCCAAGACTCAACAAGGACGTTTCAATAATCCCTCATGTTCGAATACAGCCTACGAAACAACAAAACTGAAGGAGAAGAGAGACGTTTCTACGGTTAATGGTGGGAAGGATAATGTCGCGAGCAGGGTGAACCGTACTTCCGGTCAGCTGTACTTCCAGTTGAAGCAAGTAAACAACACGCATGACCAACATCACGATTCTTTGATAACAAATAATAAGAAAGAATTCCATTTGAATGATCGTAATCATAAACCTGTGAATCTCTTCACACGTGATAAAGTTTCAACCAATCAGAGCAGAGATCGTTTATTGCATGACCAATCAGAGGCTGCCAAGAGTAGAGGAGGTTTCCCTGTAGAAGAAAACCAGAAGCGCAACGCTGATGAAGAGAAAGGAAATGGGTTCCAGGTTGGTAAGGATGAGATTGGAAACAACCTGCTGGACAGACGGGACGAAACCAAGACAACGTTATGTAGTCTAAATACGGGCGCCAATTTTACAAGTACTGTAGAGAGAACTCAAAGATGTTCTACGAGAAATTCTGCCTCATCTGCGACATCTGTTGCTAAGCGACGCTCTCCGAGAAATGAACGCCGCAGTGATTCGCCAAAAGAGAAGTTCCCAAGACGTGAGGTTCCAGCAAAGGCACAAGAGCAAGCTACTACTGACCCTAAGAAACAAGACTCACTTCTGAACACAACGCGGTCGTTTTCATTCCAAGAAGACTCCTGCTCTTCTGCTGTTCTTTTCGACAACTCAATGGACACATCTGAAAATAAAGTGGCCCCAGGCCCGAATGTATCACCAGAACTTTATTCTGAGCCTCTAGATGAAGAGAGAGCTAATCCACAAAGCAATGTAGGTGATGGTGAAGAGTCTTTAGGGTATAGTATGAGTGATAGCTACTTGGCTCAGTGCGGTGGCTTCACACAGATTAATTCTGAAGTCCACCACAGCGAACAGTTAGAATTTGATGGGATTTCGTCGATCTCGGACGACATAATTGCTCAGCACTGTGATGTCATACTTCAGGAAATCGACAGTAAGAGGAACACTCGGCGGAGAAGTAATTCACCGGAGTTTGTCGACCAGAACGATCCTTTCCAGAAAAAGGCGAATAGTCAAGAAAAATTCCAGGAAGGGAATTTCCAGGAAGTCAAGCACCAGGAAGAAAATTGCCAAGATATCAACATTAACAAATGGAAGCGCAATCGCCATCCAAAGGACAAAGATCACGAAATCGGGAATGTGGATGAGGACATTGTCGGGGAGTTCGATTCCGGTGGCCGCTTTCAAACTGGCGTGTCCGTGTCTGGCCACCTCACCGGGCCATGCAGCCCTGTAACCCCTAGCAACGAGACTTCCAGCCCAGGCTCTCTCGTCATCGACTCTGAAGCCTCGCCTTCATGTACCTACACCAGCGTTGTTATTGTCGACGTGTCAGCCAATGAGCTTCTTTTCCATCATTTTATCAAAGAGTGGAAGGTGCGAAAAGAGTTCTCCTTGTCACTGGGCTGTGAGAGAGTACTTGATAATGTGCCCAAGATAGGAGGATGCTTCAATAAGGGACCTATGATAAAACATAGTCCTACTTTGAAGGGACTTGCTATAGATGGTACGGATGAAGCTGTGGTTGGGCTCGCTGTGTGCTGGGGAGGTAGAGACGCCTATTATATTTCCCTTAGAGAGTCTGGTCACGTGACTGAAGGCACGGGCTGCCTTGACGAATCGGTGGTTGCGTCCAACTTGTCGGTTTCTGCAAGACTCGAAGGGATAAAAGCCGTGCTGGAATATAAAGGAAAACGGAAGGGAATGAAGTTCTGCTTCGATTCAACAACGCAGTACAAGGTCTTAGCGCAAAGCAGTGGTATAACGTTAAGTGGTGAAGTCGAAGACCCCAAAGTAGCTGCATGGCTGCTCGACCCTACAGCAAAGGAAAGAAGTCTCCATCATCTTGCAGCGGAGTACATCAGTGATAAAACAGAGTTATTAGAAGGTACCGGTGCAGTGTTAGGGTGTGGTAGTCTTGGGTTAGCTTCTCAAAGTCCTATGAGTGGCCGAGCGAGGTCTAGTACCGAGGCTGTTGTTACCTATTGGTTGATGAAGCAGCTTCGATTGGACTTGAATAAAGTTGGGCTTGACAGAGCATTTTACCAGGTTGAGATGCCAGTAATGAAGTGTCTGGCTCGTATGGAGCTCAATGGTATCGGTTTTTCTGAGGACGAATGTGAACGACTTAAGTTAATCCTACAGACTAAACTAAGATCACTCGAAGAAACTGCTTACAAGTTAGCCAACCACAGCTTTTCTCTGACAAGTCCTGACGATGTTGCGACTGTGCTGTTTATGGAGCTAAGGCTTCCCGTTGATGGTAAACTTGAAGAAAACAACGCAACAAAACGACGAACCCTTGGGTCAACGCGACGAGTTCCAGCCGCCAAACGAGGACGAAAGCAGCTCAACCACCTCAGCACCAATAAAGAGATTTTGGAACGACTTAAAACCTTTCACCCATTACCCGGCGTGGTCCTTGAATGGCGGCGCGTGAACTGCGCGCTTACGAAGGTCGTGTACCCGGTGCAGCGCCAAAACATGTTTAATCCACGAGTTAACATGAAGCGCATATACACCACAAGTCAAATACACACAGCTACGGGACGAGTGTCCTTCGCTGAACCAAACCTGCAGAACGTCCCGCGAGACTTCGAGATTGATCTTCCAACGAGTGCTTCCACAATCCCGCCACAGGGAGCCCAGAGGATGAATCGTGCGAGTGATTCCAAGTTTTCAGTGAGCATGCGCACTACCTTCATACCTTTTGAAGGAGGAGTCATGCTTGCCGCTGACTACTCTCAATTAGAACTGAGGCTCATTGCTCACTTGTCAGGAGACGAGCGCCTGCTCAAGCTACTTAATACCGGTGGAGATGTGTTCAAAATGATCGCTGGCTCACTCAATGGAGTTGAGCCCGCGGCTGTAAGTGATGTCCAGCGGCAACAAGCGAAGCAAATCTGTTACGGGATTATCTATGGAATTGGCGCCAAATCTCTCGGTGAACAGCTGGTTGTTAGCGAGGAAGATGCATCTGTGTTCATTGAAAAGTTCAAATCTCGTTTCAGTGGAATAAAGGAAGTATCTAAAAACAAC

Transcript

Actinostola_19877

Protein

Actinostola_19877

SLGIVEAQRNDEKEQNTGKSRLSKRGSSKSSESDSTGSSTSSILEVCPGSDSDVLNLASWGLPPSVLQRYNDMGITHMFEWQAECLRTGNVLRGGRVLILHNYVHKKVIFIISTISIIIVISTTTTTIIIITIIIISITTIIIIIISITTIIIIIISITTIIIIISITTIIIIIISIPTIIIISITTIIHHYLHHHHHHHILTTIIITFVIIIIITTTIIHCVTTIIIITTTIIIIHIIIISIAITNILLLGFVIIITTTIIIIIYICYIFQKSYVHIFSEIYIATEPPIQIVCMSATLPNLDMLARWLAADVYFTDHRPVPLTEMVKVGPTIYDNTMKKIRDIDMTTAVANDNDHVIPLCKETITGGHSVLIFCPTKNWCEKQAEAIARHFATIGNAALARKSDNSSHKSGFVKASDLIAFDYEGIREVFEQLKRTPVGLDSVLRRVIPYSVAYHHAGLTVDERDIIEGAFRQGTIRILVATSTLCSGVNLPARRVIIRTPTFHGKMIDPLVYKQMAGRAGRKGVDELGESILVCKTTERHKATTLMKSELKPVQSCLLYYFFSKQVKEMNGGMKRALLEVISSGVVTGMRDVERYSACTFFASSSHESDTDGTKCVITDTIKFLVDNEFIRVQVTKDKKADEDKVRLCGHVLRDAHKEPNIIHLCAQHREPSTRALLVKLSLLFTNILTKPFQESEAASSHERYVPTQLGAATVASALSPDEALVVFGDLQQARKCFVLESELHIMYQVTPIYVETQWPNLDWNQFLSIWERLPSHMRRVADIVGIQEVYLSLASRGRIPTRTPQQRQQLRVHRRFFAALALQDLVHEVPLNVVATRYGATRGMVQSLQSSASTFAGMVTVFCQKLGWINLDLLLSQFQSRLSFGVERELCDLVRISVLNAARARMLYTAGFQTTASLASAKPEDVETVLRNAAPFVSERKHHGETDVEVRHRNEARVIWVAGKRGLSEKEAAVLIVTEAKQHLKDDVAQLGIHWKATVPEVSIPEVSIPEVPGTSIGLKGQGTLSRDKDTTGKKRRYSNRRKLSGSYRQRKSPPLRRSSRSPNNNELPVSKAKDEEDRRETTVTTARMRDIEKHSLVTKGSDGMSDLGSGKDVAIIDYKAQKSNALSTCLDGKKKGVTEVNMVSEAGRAGLCQKQPLQKDQERLTRGDDMRPPDVNVNNAKTQQGRFNNPSCSNTAYETTKLKEKRDVSTVNGGKDNVASRVNRTSGQLYFQLKQVNNTHDQHHDSLITNNKKEFHLNDRNHKPVNLFTRDKVSTNQSRDRLLHDQSEAAKSRGGFPVEENQKRNADEEKGNGFQVGKDEIGNNLLDRRDETKTTLCSLNTGANFTSTVERTQRCSTRNSASSATSVAKRRSPRNERRSDSPKEKFPRREVPAKAQEQATTDPKKQDSLLNTTRSFSFQEDSCSSAVLFDNSMDTSENKVAPGPNVSPELYSEPLDEERANPQSNVGDGEESLGYSMSDSYLAQCGGFTQINSEVHHSEQLEFDGISSISDDIIAQHCDVILQEIDSKRNTRRRSNSPEFVDQNDPFQKKANSQEKFQEGNFQEVKHQEENCQDININKWKRNRHPKDKDHEIGNVDEDIVGEFDSGGRFQTGVSVSGHLTGPCSPVTPSNETSSPGSLVIDSEASPSCTYTSVVIVDVSANELLFHHFIKEWKVRKEFSLSLGCERVLDNVPKIGGCFNKGPMIKHSPTLKGLAIDGTDEAVVGLAVCWGGRDAYYISLRESGHVTEGTGCLDESVVASNLSVSARLEGIKAVLEYKGKRKGMKFCFDSTTQYKVLAQSSGITLSGEVEDPKVAAWLLDPTAKERSLHHLAAEYISDKTELLEGTGAVLGCGSLGLASQSPMSGRARSSTEAVVTYWLMKQLRLDLNKVGLDRAFYQVEMPVMKCLARMELNGIGFSEDECERLKLILQTKLRSLEETAYKLANHSFSLTSPDDVATVLFMELRLPVDGKLEENNATKRRTLGSTRRVPAAKRGRKQLNHLSTNKEILERLKTFHPLPGVVLEWRRVNCALTKVVYPVQRQNMFNPRVNMKRIYTTSQIHTATGRVSFAEPNLQNVPRDFEIDLPTSASTIPPQGAQRMNRASDSKFSVSMRTTFIPFEGGVMLAADYSQLELRLIAHLSGDERLLKLLNTGGDVFKMIAGSLNGVEPAAVSDVQRQQAKQICYGIIYGIGAKSLGEQLVVSEEDASVFIEKFKSRFSGIKEVSKNN

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00476	DNA_pol_A	DNA polymerase family A	Family	Interproscan
PF20470	HTH_61	Helix-turn-helix domain	Domain	Interproscan
PF21099	POLQ_helical	DNA_pol_Q helicase like region helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001098	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002298	Family	DNA polymerase A	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR019760	Conserved_site	DNA-directed DNA polymerase, family A, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR046931	Domain	DNA polymerase theta-like, helix-turn-helix domain	Interproscan
IPR048960	Domain	POLQ-like, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10133	DNA POLYMERASE I	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0097681	Biological Process	double-strand break repair via alternative nonhomologous end joining	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-