Gene detail

Detailed information of Actinostola_19122 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_19122	30S RIBOSOMAL PROTEIN S1	scaffold756_size220473	125764	141185	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_19122

ATGGCCAGTGCACAAGGAGCAAGGGATGCTTCTCTAGTCGCTCAACGACTGAAACTCGAGGAAGAAACGGTTCGTCAAGTCATTTCACTGCTTGACGATGAAAACACTGTACCTTTCATAGCTCGCTATCGCAAAGAACAAACTAAGGGACTTGATCCCACGGTACTTAGACAAATAGAGGCTTTACATATACAGCAAAGAGAAGTAAGAGTCAAAGTGGAAAATACCAAAAAGAAAATTGGTACTAATCTTACAGATAATCTTACAATATTACTCAACAATGCCCAGACGTCAGAGGAAGTCGATGATATTTATGCTCCATTTAAAAAGGGTCACAGCAAAACCTTGGCTGCCAGAGCTAAAGAACTTGGTCTGGAGCCATTAGCGCAAATGGTGCTTAACAACTCAAGAGAAAGGATAAACTTTCAAAAATATGTGACTCAAGGGAAGACAGGCAAGGTAGAAAAGTGGCCTTCAAATTTGGAGTCAACTTTGAGTTCCAAAGTAAATAAAGATGCAAAGTTGTCTGAAGAAAGCAAAAAATATCAAAATTATCATGATTTTAACAGAAATGTCAAATTCCTCAGATCACATCAGATTTTAGCCATCAATCGTGCTGAAACGTTAAAGATTGTAACAGTCAAAATCACTCTACATGATCAAGTGAAACAGAGATTTTTAGAATTTTCAAAGACTCGCTGGTTATCAGGGGAAAACAAGCTGCTGTATGACTCGGTTAATGATGCATATGAAAGACTATTAGCACCAACATTGTGTAGGCGTACAAGATCAGCGTTGAAGAAAATGGCAGAGAGTGAAAGCACAAGCGTATTCACCACGAACCTGTATAGCTTGTTACTTACACCTCCCATTAGGGGTAAAGTTGTTCTTGCCCTAGATCCAGGATACTCTAATGGATGTAAAATGGCATTACTAGGCCCTACAGGTAGTTATAGCGTATTCACCACGAACCTGTATAGCTTGTTACTTACACCTCCCATTAGGGGTGCTGTTTTGGAAACTGGACGTATTTTCCCAACAGGCCGAAAGGCAAATATGGTTGAAGCAAGATCTCAAGTGATATCACTTGTTTTTAGACATAGTTGTGAAACCATTGCCATAGGTAATGGAGTTGCATGTAGAGAAACAGAGATGTTCATTGCAAAGCTCATCAAAGACAAAGTGTTTTATCCACTAGAAGTTGTATATTGCATTGTTAGTGAGGATGGTGCATCAATCTACAGTGCTTCCCAAGAAGCCATAGCTGAGTTGCCGGACCTGGACCTCAGCATGCGAGGGGCTGGGAGCCCAGTCAGTGTCCATAGGCCGAAGACTGCAAGATCCGCTCTTGGAGCTCGTAAAAATAGAACCAAAACACCTTGGTATTGGGATGTACCAGGCAACATGACATTCCTGACAACATGCTACACAATGCTTTGGATGGGGTCCTTACTGACTGTGTTATTGTTTCTACAGCATGACATTCCTGACAACATGCTACACAATGCTTTGGATGGGGTCCTTACTGACTGTGTTAGTCTTGTTGGTGTTGATATAAACGCTGCTGGTGTAAGCACTCTCAAGCGTCTAGCAGGGCTGAATGAGAAAAAGGCAAATGCAATACTTGAATGGCGAGCACGAAATAAAAGATTCATCACCCGTAGTCAGCTTTTGCAAGTGAAAGGAATTGGCAAGAAATCTTATGAACAGTGTGCTGGTTTTGTGAAAGTTCTTCCTGGGACTCTAGAGGAAGATCAGTCTTGTTCGAATGTTGCAACAGTAATTATCGCAGATGATGATGATGATGATGATATAGCTACTGGTTCCAAAAGAAAACGTCGTCAAAAACCCATCGGTTCAAAAAGGTCGAAAACTGCAGTTGTTCAGCCAGTATTGAACCATTTGGACAGGACATTAATTCATCCTGAGTCGTATGATTTGACAGAGAGGTTAATGCAGAAAGTATCAGTTTGTAGTGGAGACATTGGAACACAGATAATGGCAACAGCTATGGAAAGACTACTTGCCAAGCAAAGTATTCAAAGTTTGGCAAAAGAGTACAATGTAGGCGAATCAACAGTTGAACTTGTGATTGATGGATTAAGACAACCTACAGACCATGACATACGGTCAAGTTTTGAGAAGCCCATATTCAACAAAGGCTTAATACTCTTTGACGATCTAAGGCAAGGAATGCATTTATCTGGACGCGTGACAAATGTCACGACATTTGGTGCCTTTGTGGATTGCGGTGTTGGGCGTGACGGTTTGTTACACGAGTCACAGTGGAATAAGCGTGACGAGCCGCTTTCAGCAGGAGATGTCGTGCAAGTTGCGGTCAGGAGTGTGGATAGACAAAAACAACAATTTCAACTACGACTTGTATCTGTAAGACCGAAACTCAGGCCACATTTACTCGCATCCACTCGTTTCAAGAAGTCATAG

Transcript

Actinostola_19122

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575	S1	S1 RNA binding domain	Domain	Interproscan
PF09371	Tex_N	Tex-like protein N-terminal domain	Domain	Interproscan
PF12836	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan
PF16921	Tex_YqgF	Tex protein YqgF-like domain	Domain	Interproscan
PF17674	HHH_9	HHH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003029	Domain	S1 domain	Interproscan
IPR003583	Domain	Helix-hairpin-helix DNA-binding motif, class 1	Interproscan
IPR006641	Domain	YqgF/RNase H-like domain	Interproscan
IPR010994	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR018974	Domain	Tex-like protein, N-terminal	Interproscan
IPR023319	Homologous_superfamily	Tex-like protein, HTH domain superfamily	Interproscan
IPR023323	Homologous_superfamily	Tex-like domain superfamily	Interproscan
IPR032639	Domain	Tex protein, YqgF-like domain	Interproscan
IPR037027	Homologous_superfamily	YqgF/RNase H-like domain superfamily	Interproscan
IPR041692	Domain	HHH domain 9	Interproscan
IPR050437	Family	Bacterial ribosomal protein bS1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10724	30S RIBOSOMAL PROTEIN S1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-