Gene detail

Detailed information of Actinostola_18761 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_18761	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	scaffold716_size231681	2060	57631	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_18761

GGCAACTACAATACAGTACAACACAACACGTATACAACACAATACAACTACCCCCTCCCTCCCTTCCCTGGGTCAATCGTATCCTTAAAGCTAATCGTGGTCCACTCCATCATTTCAAAGGTGAAACCATCTCTAGATGAAGCGTTTGTCATCCAGGAGCAAAATGTTGCATTAAACTTTATTGGTTCACGTGGAGCACGGCCAGGTGTTACTAAAGAGAAGCGCATCAAATATGCCAAAGAAATATTGCAGAAGGAAATGTTGCCTCATGTTGGAGTCAGTGATTTTTGTGAAACCAAAAAAGCTTACTTTTTAGGGTATATGGTACACAGACTGTTATTAGCAGCCTTAGGGAGAAGAGGGCTTGACGATCGTGATCACTATGGAAACAAACGCTTGGATCTGGCAGGACCATTATTAGCATTTTTATTTAGAGGGCTGTTCAGAAATCTCATGAAGGAAGTAAGAATGTACGCTCAGAAGTTTATCGACAGAGGAAAAGATTTCAACATTGAGCTTGCACTTAAACCAAAGGTTATCACAGATGGCCTGCGCTATTCCTTGGCTACAGGGAACTGGGGTGACCAGAAAAAAGCTCACTCGGCAAGAGCAGGAGTATCACAGGTACTAAACAGACTGACATTTGCTTCAACACTGTCACATTTACGACGTCTCAACTCTCCAATTGGACGTGAAGGAAAGTTAGCAAAGCCAAGGCAGCTGCATAATACTCACTGGGGGATGATCTGCCCTGCTGAGACTCCCGAAGGCCATGCCGTAGGGTTGGTAAAGAACTTAGCCCTCATGGCGTACATCTCCGTGGGTTCCCAGCCAAGTCCCATTCTAGAGTTCATGGAGGAATGGACCATGGAGAATTTGGAGGAAATAACACCCTCGGCTATCAACAATGCTACCAAGATATTTGTAAATGGCTGCTGGGTTGGTATCCATCGTGATCCTGACCAGCTAATGAACACATTAAGGAAACTAAGGAGGCGTATGGACATCATTGTATCTGAGGTTTCCATGGTACGTGACTTTAGAGAGAGAGAAATAAGAATCTACTCAGATGCTGGTCGTATTTGTCGTCCTTTGCTGATCGTAGAGAACCAGAAATTATTGCTGAAAAAGAATCACATTGACATGTTGAAGGAGAGAGAGTACAATGACTACAGCTGGCAAGATCTTGTTGCTGGTGGTATTGTAGAATACATTGACGTCAATGAAGAAGAAACTGTCATGGTTGCCATGACACCCGATGAGCTGGTGGAGAAAGGCCAGGCTTACTGCTCTACGTACACACACTGTGAGATCCATCCATCTATGATATTAGGTGTCTGTGCATCTATCATACCATTTCCTGATCACAATCAGTCTCCACGTAACACCTACCAATCTGCTATGGGTAAACAAGCTATGGGTGTATACATTACTAACTATCATGTACGCATGGACACCCTAGCCCATGTCCTGTACTACCCTCAAAAACCTCTCGTCACTACAAGATCCATGGAATACCTTCGATTCAGAGAGCTCCCTGCAGGGATTAATGCCATTGTTGCAATTGCGTCCTACACTGGATATAACCAGGAAGATTCAGTTATTATGAATGCATCAGCCATTGACAGAGGCCTTTACAGGTCAGTGTTTTACAGATCATATCGTGATCAGGAATCCAAAAGGGGTCTTGATCAAGAAGAGACGTTTGAGAAGCCCACAAGAGATCAAGTATCAGGGATGCGCAATGCAGTGTATGATAAACTTGACGAAGATGGTCTCATTGCGCCAGGCATACGTGTCAGTGGTGATGACGTTATTGTTGGAAAGACAAGTACACTCCCTGACAATGACGATGAGTTGGAAGGCACAACAAGAAAGTTCACTAAGAAAGACGCGAGTACCTTCCTAAGACCCAGCGAAACAGGAATAGTTGATCAGGTGATGGTTACAATCAACCAAGAGGGTTATAAATTTACCAAGATTAAGGTTCGCTCCGTGAGAATCCCTCAGATTGGAGACAAGTTTGCCAGTCGTCATGGTCAGAAAGGAACCTGTGGTATTACCTACAGACAAGAGGACATGCCGTTCACTTGTGAAGGCTTATCACCTGACGTCATCATTAACCCACACGCTATTCCTAGTCGTATGACCATTGGTCACTTGATCGAATGTCTACAGGGAAAAGTGTCGGCCAACAAGGGAGAGATTGGTGACGCCACCCCGTTCAATGACGCTGTCAATGTACAGAAAATCTCACAACTACTCAACGACTATGGTTACCATCTCAGAGGAAACGAGGTGTTGTACAGTGGGTTTACTGGCCGTAAACTAAACACACAAGTGTTCCTCGGTCCCACGTACTACCAACGACTTAAGCACATGGTAGATGACAAGATCCATTCACGTGCTCGAGGACCTTTGCAGATACTAACAAGGCAGCCTATGGAGGGCCGCTCACGTGATGGAGGCCTTCGTTTCGGTGAGATGGAACCACAGATTTCAAGAATTCGTATGCCGTACGCAGCCAAGCTACTGTTCCAGGAATTGATGTCCATGAGCATAGCACCTCGAATGATGGTATGCGACCCTGTCAAGTAG

Transcript

Actinostola_18761

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00562	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan
PF04561	RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	Domain	Interproscan
PF04565	RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	Domain	Interproscan
PF04566	RNA_pol_Rpb2_4	RNA polymerase Rpb2, domain 4	Domain	Interproscan
PF04567	RNA_pol_Rpb2_5	RNA polymerase Rpb2, domain 5	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007120	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan
IPR007121	Conserved_site	RNA polymerase, beta subunit, conserved site	Interproscan
IPR007642	Domain	RNA polymerase Rpb2, domain 2	Interproscan
IPR007645	Domain	RNA polymerase Rpb2, domain 3	Interproscan
IPR007646	Domain	RNA polymerase Rpb2, domain 4	Interproscan
IPR007647	Domain	RNA polymerase Rpb2, domain 5	Interproscan
IPR014724	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR015712	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR037033	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR037034	Homologous_superfamily	RNA polymerase Rpb2, domain 2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0032549	Molecular Function	ribonucleoside binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-