Gene detail

Detailed information of Actinostola_17788 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_17788	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	scaffold61_size801414	377135	391575	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_17788

ATGACAGCCGTGACCGGTGAGCTACTCGCCTCTACGCTTAGCCCTACAGACACGCAAATTGTGCTGCCTGATAAACTATCTGCCATTAAGAAAGCAGAGAAGTTCTCCTCGCTGAAGCTCAAATGGAACTCGAGTGAGGAGGTATTGTCCATTCTAATAAGCTTTGACAGACATGAGTCGTGGTTTTCTGAAAAAGTTCCCACCAGACCTCCAAATGGATCAATGCTTCTTTTTCATCGTAAAAACATCAAGGATTATCGTAAAGATGGCTACACCTGGAAAAAGAGAACCAGCTCAAGTTCATATATAAGAGAAGATCACTGTAAACTTAAAGTTTCTGGAGTCAATAATCCAGATATTGTGTTAGTCCATTATCTAAATCTCCTGGATGATTTATCAGAGCAGTACACTTATGTCTGTGAGCGACAGAAGGCCAATATATCGTACCAGATTAATTCAATCTTTTCTGGTATTGAAGAGGACTCAATTCCCAAATTTGAGATCACCGAGGAACAAGACACGAACTCTCAAACACCTGGTCACACACCACAACCCCCAAAAATACAAAATAACAAGAAACAATTCAAGATCACTATCACACCCGCAATCAGTGACGACTTACCGCCGTCGTTACCGAACGTCCTTCAGCAGCGCGTCAACATCCCTTATGTGAATCAATGGATGAGAAATAATGATGGGACCAACCCTCTCATCGCTCCGAAACTTCCAGACACTCACCCTAAGCAGTTGCCAAGCTGCAGTGGTGCGACAGTCCTGTTCAGTCCGGTCTGTAGTGTAAGAACTTTGCCAAATCAATCGCGGAATTCCCCGGTCAAATCTAATGGTTTAAATACTCAGAGTGTTGATCTGCCTACGTCGGTGGTGCGATTTCCCGGTACCGTGACGAGCTCCATTAATGTTCCCATCGGGTACATACAAACACCGCAAACACCAATAACTGAGATCAACCACAATGTACCTCCGACACCCGAGACCATTGCGCGAACAATGCACACTACGTGTACCTCGAACAAGTCAACTCATCCCCAGCCCAACTATGCCAATTCTGTCGGCGTTGGGACCCAGCCTCTTCTGTTCTTTAGCTCGGCATCTATCCCGGCAGTCGCACGGGCTGCGTCAACCCTCAATCTACCCAACAATAATGGCGTGCTGGAGATGAACTATTCCGTTGCTAATACTCCATTTTTGACCGAGAATACTACTACGACAACCACGAACACTGTGACTAGTTCCTCTGTGTTTGTTCAAGAACCCGGACATAACGGGAATTCGACCTTGGTTTTTCAATTCAGGCCTTTGGAATTGACCCAAGGAAATAACGGACCTTATAATTCGCCCCTAGGGAATAAAGGACCTTCAAATTTGTCCCAGGCAAATAATGGATCTGTGGAACCAGTGCAAAATGGTTCCTTTCAAAACAATAGTTCAATTCAGAGCAACATTCCTTTGACAACAAGCCCCAGTGCTTCGACGTTATCTGCTTTCAATGACGTAACTCTGACGTCAGATAGTAGCATACCGATTAATGGACCTCCAAGGTCCCATTTCCAGGACAGTCTCACTGAAGCCAGATCATCAGCCAATCAACAACCAGCACCTGTAGAACTCAGCTCCAGTCCCTCAAGCGATTATGGAAGCCTTTTGTCCGAGTCGGGAACGCGCTTTTCGGGGTCTGAGTCCATGTCTTCTGAGCTTGGTAGCAATTCGTGTGAAAACGGGTTTGACGGGCCCTTTCGGTTACCCCTGCCTGTCACGCAAGGCAACCGTGGTTCTACGCAATTCAGACTTAATACAATTCTATCGAGCAGTCACACAATGGCACTTCCGGGACATGCAAACGAGGCTGAGTGTTACCATAGAGACACCAGTACACAGCTGGACTCAAATCCCGTGGACATGGCTTTTGACTTGCCAGAGTTACACTCGTTGGACGAACTTGATTATGATGGATTGAATTTCGATTTGAACGCGGTTTTGGGAGAGTATTTCAATAGCCCTGAAACAGTTCCTCAGACTTTTGGAGAGAATTCTGCTATGGAAGGCAGAACGCATAATTCAACGGGACACCCACTGGACGATGCACGATGGCGCAAGCAGGAAAACGGCACGGGTGTTGCTAGGAACAGTCAAACCAGAGGAGAGACTTCGTCTTCTCGCATCCCTCCAGCTCAAACTGCATCAACATCAACTTTACAAGTTAACGATGAGTCCAGCCACAGTGGCACATGCCGCACCCCAGTCAACGATGTTGTCATGACAACCAGTCATTCCCCGTCTCCACAGAGTATGGGCTGCAATAGTGATGACGTAACGGCTGGTCGTCTGCCTCTGTCGTATGAAAATGAAGGGCGTCAGGACGAGGCTGAAGGAAATAATGATTCAAATAATCACTCTTGTGCACCGGAAGTGAGCTTAAATTACTCTTGTGGACCGGAAGTGAGCTCAAATTCATCTTTACTTCCGGCTGTCGTGCCGGGTTCTGCGTGTATAAGCGATTTCTCCCCCGAATGGTCCTACCCCGAGGGCGGGGTCAAGATTTTGGTTACCGGGGAGTGGTCTTCCTCGGATATATCGTATACGTGTCTATTCGATGGGTGTAGTGTCGAGGCTAACCTCGTCCAAGTGGGTGTCTTACGCTGCTACTGTCCGCCACACGAACCGGGCCTGGTTACCTTGCAGGTCGCTTGTAATGGGTTCATTGTCAGCAACGCGTGCGTGTTCGAGTACCGTACACACGATTCCCCGGGAGATTTAAATACCCACCACGAGTGGTTAGCGATGGACGACGCGCGCTTTAAACTCGCGTTACTCGACCGACTGGAGAGATTAGAGAGTCGACTCGGTGTCCAGACTTCGGCCGTCAATCGTACTCATTCGGAAACCCGACAGCAACAGTGTAGGACGTTCGAAGAGCGGATCATAGTGACTTGTAGGGCCCTTTTTGAGGCAAGTGCCGCGAGCGGAGCTACTAGTCTAAAGAGGCCCTACCGTGGCATGACCCTCATGCATCTAGCATCAGCGGTAGGTTTCTCAACATTACTTCGCGACATGACATTGAAATGGCAAGACCCTCTGACTTCAGAGTTAATCCGCCTAGAACTAGATCCCTCAAGGAAGGACGAATTCAACTGTACACCGCTGATGTGGGCATGCGCACTGGGGCAAAGAGCTGCAGTGGCCGAGTTGTTGTGTTGCCATGCCAACTCCTTGCTCGTGCCAGATGCCTGCGGGCGCCTTCCTTTGCAGGTGGCACGGGATCGAGGCTATTTTGAAATTGTGGACTGCATTGAGGAATTCATGATGGCATCTCCAGAGAGACGATCCGTATTCAACCTCTACTCTTCAAGCGAAGACGAAGATGAAACATCGGAGAGCAACGTGCCATCTCCATCGCGTCTAACTACGTCCAGTTCGAGTGGAACAGGACACTACAGTTCCCCATCCCTAGAGACGAGCTTCACGGATCGCGCATGCTCTCCGATGCACGTAGAGGAAGTCACTAATGGCGGTGTCCTCTTGAATCAAGCTTTGGTCCAAATACATGAGATGATCAACGAAGCTGAACGGCAAGCTGACATGGACAATCAAATCCTCGCGGGTCGTCTTCCAATGCAGCTATCACCCGTCCAAGAAGAAGTCTCCCCAGGGGGGTGGGGCTCGTCTGGTAGTCGATTTAGGTCCTTTAGTTCGGCTTCGTCTCAAAGCTCACCTCTTACACCTTCATCGAAGTCTTCGTTGTCACCAGGGTCCCCTGCATTCCTAAATTCGCCGCATTCGTCACCTAGTGTACCCCCGGACACAAAGGAATTCCATGAATTCTTGTGCAGTTCAAAGAAATTGCTGGAGAAGAATTTTTCTGAATTAACTCTCACAGATCGTGAACAGCAAGAGTTGTATGAAGCAGCTCTCATCATCCAGGAGGCTTACCGTTCGTACAAGATTCGTCGACAACAACATGATGAAGAAATGCAAGCAGCTGTCTTGATACAGAATCACTACCGTCGATATAAACAGTTTCTATTGTACAAGAAAAGAACGCACGCAGCTTTGATCATCCAAAACCAATACCGAGCCTATCGAGAACACGAGTTATTCAAGAAGAGTCGAAGAGCCGCCGCCATTATACAGAATCAATTCCGAATTTATCGTCGACGAAGACAGAAACGACGCGACGAACATAAATCGAAGCAGCAAGAAGCACGGTTCATGAGACAGTCGTCCAATAGGTAG

Transcript

Actinostola_17788

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	CG-1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01833	TIG	IPT/TIG domain	Domain	Interproscan
PF03859	CG-1	CG-1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR002909	Domain	IPT domain	Interproscan
IPR005559	Domain	CG-1 DNA-binding domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23335	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-