Gene detail

Detailed information of Actinostola_17785 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_17785	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	scaffold61_size801414	289823	317815	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_17785

ATGGATGGACTACCAGATGTTATACTCCTAAAAATTTTCTCATATCTACCAGTGGCAGATCTTGGTCGAGCCTCTAGAGTGTGCTACCAATGGCAACGAATTTCGTACGACCACACTTTATGGAAAGCCGTGAATTTACGCCGAGTTGCAAACAGCATGACTGAAGATCATCTACAGAGTCTTATCAAGACAAGGCTGTCGCCACAGCTCACTTCGTTGAACCTTGGAGGAAGCAAAGTTTCTCATGATGTCTTTCTGGAGCTGACACGCAAGTGTAAGCGCATCAAGCACTTAGTTTTTGGACGGGGCTCGAAGCTCAAGGGATCCTGTATGAAGAGACCGGCCACCTACGAGTTTCCATCAGAGTTAGAGCTTCTGGAGTTGAGGCCTGTCAAAGGAGACTTCAGCTTCATAAGACGAATTAGCAGGCATTTCTGTTCGTTAAAGTACCTTGGAATTGGAGTAATGACATCCAAAGGAAACATGCCATACATATTTACCAAACTTCAAAATCTTATAATCCTCGATTGTACAAACTGTGATACCATGACTGACGATGTACTCGCTAAAGTTGCTCAAAACTGTCCTCTTCTGGAGTCTGTGTGCTTAAATGGCTGCAAAATGATTTATGGATCAACGTTTTCAGAGTTTTTGTCTTCCTGTCCTCGCCTCAAGACGTTGCTACTTCGGTATACCCCGGTGCGCGACGAGTGCTTTCAGGTCCGCGCATGGAACAACGTCCAGTTAGAAGAGATTGACATTTCAGCGTGTGCTCAGCTGTCGCAGATTGGACTAAGCAGTTTAGTCAGTCGAATGCAGACTATAAAATACCTCAATCTTTCCTACTGCGGAGTCGGACGTGCGGTCACTGACGCAGTCCTCCTTGAGATGGCTTCTCGCCGCAACTGCGTCAACCTCGAAATGCTTGACGTCCGTTGGAGTCTGACGCTCACCCCTGATGCGCTCTTCGCCTTGGCACAAGCATCGCCCAAGCTACGCTGCTTAGGGGTTTACCAGTCGTCCAACATCACACCCGCAGCGATGGCTGAAGTCCTCATCGCTCTTCCGCGCCTTGAGACCTTAGAATATGGAGCCTTTGGCAAGGCGGCTTTGTCTGATTCGATGTTAATCCCAAACTTGATTCGCTGCTCGGAAAAGTTTCAAACGCATGCGCGTGTGTGTCAACTCCGGCGGGAAGAAAGAAAATCCAAGATGGCGCGAGGTCGGACAAACCCGGGAAAAGGGCCAGGAAAGGCTGTTAAAACTCACAAAAACACAGCCTGGCTGTGGGCAGAGACCACGGAGCCACACAAGATAACACAGAAGAACGTAGAAACAGCGTATCGTGTAGCAACGGTTCCCTGTGTGCGAAGCGCTTGTCGGATAAACTGCAAGTATAACCCCAACTGTGTGAATGGTCTTGGTGAGAAGTTATGGTTAGGAGAAGTACAAGACAATTACTGGCATAGTTTAGAAGATCCTGAAACGGAAAGAAGAAAACAGGATGACTTTGTAGGTCTAAAGAACCTCGGTGCAACCTGCTACGTCAATACATTCTTACAGCTGTGGTTCCATAACACCAGTCTGAGATCAGCCATATATCACTGGACTAACTTAGACTCCAATGCTGATGATGCTTCACAAGATGGCAATGATAGTATTGTGATGATAGACAAGAACGATTCAGAGAAATCCAGTATTGGACTTAATACGTTACCTCCCATTATGCCATCTAGCTGCATTGGTGCAGACAGTATAACCAATATATGTGCACACCTGCAGGTTATCTTTACGCAATTGCAGTATAGCTGCAGAAGGTACATAGACCCTACTCCCTTGATTCATAGTCTGGGTCTGGATACTGCACAACAACAGGATGCTCAAGAATTTAGTAAACTTTTTATGTCATTGCTTGAATCAACTCTATCAGCCCAGTCAAACTCTGAAGTCAGAGATGTGATCCAAAAACAGTTTGGAGGGGAATATGTGTACGTCACCAAGTGTGATAAATGTGGTAATAAGTCCATGACGTTGTCACAGTTTTTTGAATTGGATGTCAACATTCAAGGACATTCATCCCTTAGTCAATGTATCAAAGAGTTTCTGAAGGAAGAGGAATTGAATGGTGACAATCAGTATTTCTGCATGGCTTGCAACAGTAAACAGAATGCAAAGCGATACATAGAGATTCAGTCACTGCCTCCTGTTTTAAATCTACAGCTACTAAGATTTGTCTTTGACAGGAAAACAAGGTACAAAAAGAAGTTAAACAGTCATGTTCAATTTCCTGATGTTTTAAACTTGAACAGTACTCTAAAAGATGATGCAAAACAAGGGACCTCTTCATATGAAATCACATTTTATTATAATTTTCAAAATATCAGGACTGATGGACCACTGTATGACCTGACGGCAGTGCTGATGCACCAGGGAACAAGTGCCTACTCAGGCCACTACATTGCTCATATAAGAGATAAAAAGACCGATACATGGTACAAGTTTAACGACGAAGAGATTGAAAAGATGCAGAATAGGCTGAAATTATCGGGTGAAGATGAGACATCAGAACCTGGAGAAAAACCAGCTAAAAGACCTAAGTGTACTAAAGGTTACCACACGTCTCGTAATGCTTACATGTTGGTGTACACTAGGAGGACGACTGATGTCATACCAGAGGCTGATGTTGAGGTCCCTGAGCATCTACAGGAACTTGTTGCTAAGGACAACAGCAAGTTTGAAGAATGGTTCACTGCTATGAATAAAATGAAAAATGATATGATCACAAGAGGGAAAAGCCTCCAGGCATCAATTCAGTCAGTCTATGAGATTCTACCTGTTAAAGGAAGAGACTATGAATGGATGTCAACAGAATGGTTGAGAACATGGCTTAATGACAGAGTAGATGTCAAGCCGCCCATAGACAATTCATCACTCCTATGCATCCATGGAAAGCTTCATCCTGAAAAAGCACAAAATGCAAAAAGAATAAGCATCAAAGCAGCAGATTTATTTTTTTATCAATTTGGAGGACTTCCAAGATTACAAAGGGATTCATTGTGTTCTCAATGCGTGCGGTCAATATGCAGTCAGATACGATTCAAAGCTAAGTTAGCTGAAGATGATAAAGCTATCAAAGCCATACTCAAGAACAAACCAGAGCCAAGTTCTGGTAAATTATTCTGGATTGGTAAAACCTCCCTTCAAAGCTGGAAAAAGTTAGCTACCTTGGAAGAAGAGGCCAAGACACCTCAAGTGTCACACAGCCCTGCCACCAAACACCAGTTTAATGGCAGCACCATTAATAGCAAAAAGGAGATCGAAAATAATCGAACAAGTCCTGACAGCAGGAAGAGAAAGAGTATGTCCACTACCGATGAAGATGGCTGCTCGACACCGAAGGACGATGAGAGTAAGAGCTGTCAAACGCCACGTTTGGATAATGGTTGTGTGGAAGAATCTAGTAAGGACAGTCCCTCTCAGATGGATTCCTCCAGCTTTGACGACAGCTCAAGATTGAATGATTCTGATGAAGATGACGATGAAGAGTTGATCAAGTTTAACGAGGATCTTCTCTGTAATCATGATAACCTTTCGCCTAATGTGACTTGTCGGAAACTCATCCCTGAATCGATATGGAAAAGACTGACATACTACTTTGGATCAGCTCATCAGTTTCCTGGAAATCATCGTGTTTGTCATCAGTGTCAGGCAGAGAACGAAGATGAACGCCAGATTCACGAGATGAACAGAACACAGGCCGCTGAAGAACGAGCAGCTCTTAGTAACCTACACTACAACAAGCACAGACCAAACCTTTATGACAATGAAATGGAGAATATGTGTTTATATGTTGTTAGCAACTCGTTTTTGGACAAGTGGAGATTGTTCTTGAGCATCACCACCACCATCACCACCATCACCACCATCACCACCATCATCGTCATTATCATCATCTCCACCATCATCATCAGCACTATCATCATCAACATCATTCTTTCAGCAATGCATTGTAATCGCATAACCCGTCCAGAGTCAATTACGAATGAATCACTTCTGTGTCCTCATCGGAAATTTATGTTTAACCCTGAACTGAAGGGTGAAGACGGTGCTCATGAAGTGTATAGTTATTTATTCAAAGATGAGTGGGACACGTTGGCCAAGATATATTCCTGTGAACACGTGATTGCCGTTACCAAGGAAACCACCAATGATGATGATAAGTCCTGTCGATTTGTAACAACACCAGAAATTTGTCAAGAATGTCACGCGTCACGCATGCTGGAGAAAGCCCGTTCGATTGAAAACTACCGTCACGCAACGATATACGTTCGTAAGATAACAGACGAACACGACCCGCAAGAAATACAAAGACGATTCGATGAGGAAACGCTTGAACTAGATTCTCCTCAAGACCCGGATTATAGTTCGTCAGACTCCAAAAAGCAGAAAAATAATTCAGACGTTTCAAAGAGACGCAGCTCAAGGCATCGGAAACAACGCGGAGAAGTGAATCTTACTGTCAACTCCAACCAGACTCTAAGAGATATCAAGCTGGAGCTGATGAAGTCATTTTCAGTCATGCCAATGGACCAACATCTAAGTCTTAAAGGAACACTCTTATCAGACGATGCTGCTACACTCAGTAGACTAGGTGTTAGACCTGGATGTCTGTTGATGTTAAAG

Transcript

Actinostola_17785

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR006615	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR033841	Domain	Ubiquitin-specific peptidase 48	Interproscan
IPR035927	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR044743	Domain	Ubiquitin-specific-processing protease 48, Ubl domain	Interproscan
IPR050164	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-