Gene detail

Detailed information of Actinostola_17580 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_17580	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	scaffold59_size806137	234794	283205	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_17580

ATGAACCTCTGTACCTTCATGTCTGACACGGATTTTGAACGGCCGTACAAAAATGCACACACCGGGGAGGGACAGAGATCTTTGGCTTACAATGACATAGCTGTTTTGACCTACGAAGCGTTTCACGGTCTTGATAACCTAACAACACTTGAGTGCGCGCGCAATACCTATTATGTTGGGCTCCCGGCCCTGTGTGTCTCCGATTGTGGCAATGGAAGTATGGGAATGGAAGATGGAAGGATTTTGGATTCTCAGATCACAGCCTCCTCTTACATCGACAATGACTATGCACCGTATCATGGAAGGATCAATACGATAAAGGTTGGATGGGCAGCCGACACATCGCATAAAAACACTGCAGGTGAATATTTACAGATTGACCTTCGTACCAGGAAGAGCATCACCAAAGTAGCTACACAGGGAAGACAAGACAACGATATGTGGGTGACTAAATACACACTGCAGTACAGTGAAGATGATGTCAAATGGACCAGCTACATTGTCAACGGTATCGTGAAGGAGATTCTGGAAAAGAATTTGGCCAGGCTGGTGGATGAAGATGATTGTGAGCCCAATAAATCCTACGCTTCTTCTGCATATAAGATAAACCCGTCTACTAACATATGGGCATCACCAAACCGCATACCAAGGAATTCTGACAATGTTGTACAAGCTTCATCCAGTGGTCCAACGAAGCCTCCACCAGGTTTTACTCCTACAGGAGATAAAGCTTATAGAAGACCATTTTCACCAGCTTTTGAGGTGAGACACATGGACGATGCTATACTTACAGCAGTACCCAAACCAGAAACCCTACTTCCACCGAGTAGCTTTACCAAGAAAACCCCCACCAAAGCAATCCGTCTTGAAGATTTGGAGAAAGAATTCTCTGAAGATAAAGCTCAAAAGCAACAATACCCACAGACACCACAGACACCACAGACACCACAGCCACCCCAGATGACTAATGCACAGCCAGCTTTCATGGGTGTCAGGCCTCCCCCTGGATTACCCACCCCTGGATTACCTAGCTCATCGATGTCTCAAGCACCACAGAGGTATCCTCACATGCCACAGCAGCCACACCCATCGCATATGTACCATGGCCAGAACTTTACAAGACCTGGACTGCAGTCATTCCCCAGGACACCACAGATGATGCCCAACAGACAAATGTACAACAAAATGCCATTTTCAGCTGGTACTCCACTACACCTACAGAGAATACCAATGGGACCAATGCACTCAGACCCAGCCCATTTAATGCATAGAGGTGGTTATCATAATGTACCGCCACCACGACCAAGGTTCTCCACACCACAAGGGTATTCAACCCAACGCTACATGAGACAACCTGATAATCGCTACCCTTACCAGCAACAGCGTGAAGGTTACAATAACCAGCAGCATCAAGGCACACCATACCAACCTTCTGACTTGGAAAGGAAGATTCATAGTATTCTTAATGATGCTGTTGTCAATGACATGGATCCATATGCCGGCTTAATGACAAGAAGAGAAAAGGAGTGGATTATCAAGATCCAGTTACTGCAATTGACTAGTAACAATCCTGATATGGATGACTTCTACTTCCAGACTTACATAAGAAGAAAACGTGCAAGAGAAAGAGCTAAGCAAGGGGAGGGGGTTGAAAACCTTTGGGGACAGTCTGCTAAAATGACTTTACCTGAATTTCAAAGAGAAGAGAGACAATACAAACCAATGGCATTCAAAGACACTTTAGGTAAACTATCAGCATCACATATAGCTCATCCCAGGGAAATGGTCCAAGTTCCTCACATTCATAAAGATCTTGATCAGGATAAACAAGGAACTGGATCAGTGGCGAAGGAAGCAAGGCGCCGCCGTCAGGTGTTGTTTCTTATAGAGAAGGCTTTTGACTTTCTTCTCGAGCTCGATGATTTTGACAACATGCACCTGCAGGCTTCTCTAGAAGAAAGGAATGATCTTCTTGAGAAGAAGCAATCAATAATAACAAAGCTTACAAACCTTCTGAAGCTTAACAACGCAGAGGATACATCTTCTAGAGGTGATTTACTGTGCCAGTTGATGTCTCATCGCAAAGGAAAAGTTCTCATCAGTCGATTATTACAAGTATTTGAAAAGCCTCAAACAGAACACCTACTTGGCTCTATTTGTCAACATATTGTAACTGTGATAAGAAAAGACCATCAAGATCAGGTTCTCCCCCTACTAATTGGTCCTTTGTCTCGTGTGATTGAGATGACTTCAATAGAGACTGTCCTACTGTCTCTCAGGCACATTGTATATGGTAATAACGAACCTGCATCGCCGCTATCGTTTGTATTAGCCAATCAGTTTGGAATTAGTGTACTATGCTGTTTGCTAAAGAGAGCAACACCATCAAGAATGGAAACAGACACGAATGAGGAAATTAAACAATCCTGGGATGCCCTCGTTAGTCAGGTGACTAAACAATTTAGTGATGTTCCCGTCAAACTACTGGCCAAGAACTTGATTGGAGTGACGCCTTTAGTGACTGTACTGGGTTCGTGCGCAAATCCCTATGATATGAGTAATCTTCAGCAACATTACAGGTTCGTATTGTCAGATTGTATTGAAAGAGGGTGTTATAGTTGA

Transcript

Actinostola_17580

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF09770	PAT1	Topoisomerase II-associated protein PAT1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR019167	Domain	mRNA decay factor PAT1 domain	Interproscan
IPR039900	Family	Pat1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21551	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000290	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0033962	Biological Process	P-body assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-