Gene detail

Detailed information of Actinostola_17279 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_17279	DICER-RELATED	scaffold56_size818591	675878	688290	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_17279

ATGCGAGAGGCCACAAAGATGGAGAAGAAAGTTGCAGATAAACCACACCTAGAGGCTCTGTGTTACTGCAAGGACCAGCTAAACCTGATTCTGAAGAGCAGTAATGACAAGCTTGATCACTGGAAAAGGATTTTACGAGCTGCTAATGGTGAAGTCATTTTTGTGGAGACAAGTGAAAACTGGAGAGAAAATGGAAACCAGTCATCTGAGGTTTTCAGAGAGATAGAATGTATTCTTGCCAAGCGATGTGAGCCATGTAAGTTTGCTGTCAAAGATGATGCATTTTGGGATGAAATAAGCAGTGTTTCTGAGTCTAAAGGAAAAGATGTGCAACCAGATGAAGCCAAGTTGGCCATTGCACTCATCAACAGGTATTGCCATTCCTTTCCTAATGATGGTTTCAGCAGTGCATTTCCTTGTTGTCATGTTAAAGTTATGGAAGAGGCTGAAAGTGTTAGTGTTGTATCAAGACTTTACCTACCAAGTCACTCGCCAATTTACTGGCCATTTCAGGGATCAGTGGTCATCCCAAAAGAGCATGCTACACCAAGTCGTATAGCTATAGCTCACTCTGAAAGTTGTGTAGCTGCAGCAGTACTCGCATGCAATACTCTGCACCAGACAGGTGAACTAGAGAAGCAAGGACCCAGACTCGCGGTGAACAGTTTTACTTTTAATAAAGCTGACGTGCTGTGTCCTGCTGAAGTGGCAGATGGTGGTAGTGGCAAGGAAGGGTCGAATAAGAGGAGAAGGGTCTATGAACGTAAGGTACCAAAGTTTATCATCTACAACAAAGCTATTGAGCTAACTGTTAGTATTGCCGAGTATGCCAACATGGTAACCTTGACAACCGCAGAGTTGGATTTCATACAGCGTTGCCATCAATATGTACATACTGATATAATGTACATTAATGGAGACTCTGGCGAGGAATACTTTCATTATGAACCCGAGAAACAAACCTATGGATTCTACGTGTTACCTCTGGATGTAGAGCACAAGTGTGAAGACGCCGTTGAAATTGGCAACAAAAGTATAGACTGCCATAACGCAAGGTTTAAAGTTTTCTCAGATGAGTTGTCTTTAGAGGCGCTGAAGATATATGGCAGCGTAGAGAAGAAAGAGAACGTTAGCACTCAAGTTGATGCTTCGGATGAGGAGAGCGACGATCGTTGTGGCAGTAGATCAAGTCAGCGGTCCAGGTTGAACGAGTTTGATAACATATATAGCAGCGTAGAGAAGAAGGAGGACGTTAGCACTCAAGTTGATGCTTCGGATGAGGAGAGCGACGATCGTTATGGCAGTAGATCAAGTCAGCGGTCCAGGTTGAACGAGTTTGATAACATATATAGCAGCGTAGAGAAGGAGGAGGGGGACGTTAGCACTCAAGTTGATGCTTCGGGTGAGGAGAGTGAAGATCGTTATGGCAGTAGATCAAGTCAGCGGTCCAGGTTGAACGAGTTTGATAACATATATAGCAGCGTAGAGAAGAAGGAGGGGGACGTTAGCACTCAAGTTGATGCTTCGGATGAGGAGAGCGACGATCGTTGTGGCAGTAGATCAAGTCAGCGGTCCAGGTTGAACGAGTTTGATAACATATATAGCAGCGTAGAGAAGGAGGGGGACGTTAGCACTCAAGTTGATGCTTCGGATGAGGAGAGCGACGATCGTTATGGCAGTAGATCAAGTCAGCGGTCCAGGTTGAACGAGTTTGATAACATATATAGCAGCGTAGAGAAGGAGGGGGACGTTAGCACTCAAGTTGATGCTTCGGGTGAGGAGAGTGAAGATCGTTATGGCAGTAGATCAAGTCAGCGGTCCAGGTTGAACGAGTTTGATAACATATATAGCAGCGTAGAGAAGAAGGAGGGGGACGTTAGCACTCAAGTTGATGCTTCGGATGAGGAGAGCGACGACGATCGTTGTGGCAGTAGATCAAGTCAGCGGTCCAGGTTGAACGAGTTTGATAACATATATAGCAGCGTAGAGAAGAAGGAGGGGGACGTTAGCACTCAAGTTGATGCTTCGGGTGAGGAGAGTGAAGATCGTTGTGGCAGTAGATCAAGTCAGCGGTCCAGGTTGAACGACCTTGATAACATCAACAGCATCAAGTCCTCATGCGCCGAGGCTCCAAGATCCATTGTGGCTCCAAGCGTTGCGTTTGATTTCCTTAAGCGTGTTGACCAAGAACTTGGTAACCTGTCCAGCTCCGTTGATCCATCCCCTATAAAACGGCGCAACGACTTTGAATCTTTTCGTGGGCGCGTTGTTACAGCTATTTACATGGCCAAGCCTACGAGATACATTGTATCAGATATCGTGTACGACATGAATCCTTTGTCAGCTTTTCCTGATCCTGAAGTTGCTGCTACCTTTTCGGACTATTACAAGCAGCGATACGGCATAGATGTCCACGAGGAGCAACCTTTGCTTCATGTTCGTCACTTGCCTAAGATTATCAATAGTCTTGCAGCAAAGTATCGGGATTCTAAAGGGCGTGATCGACCCCTCCCTTCTATGGATTCTAAGAGGCAAAAGAGGGCAAGAGTTCTACTTATTCCTGAACTTTGTTCCATCCATCCCATTCCTGCACCGCTATGGCAGAATATCCTTTATATCCCTTCGATACTACACCGTCTTGAGGCCATCTTACTGGCAGAGGAGCTGCGACAAGTCATTGCCGCTGAAACTGGAGCTGGAAGCACTGAGTGGCCAGTGGGTGTTGAACTACCCTTGGTAACCATGGGAGAAGATGTTGGAGAATACAATGAATTGAGAGTTCCATTGCACGTTGGTTCCGAAGAATTCAATGAGACCAATGTTTCATTGGGATGGCAGCTTGTGAAGTCTGAAATCTTAGAAGATCGACCAGACAATGCTAATGAAACTTTGGTAACCTCTGAGGAACCGCTCGAAGTTCTATCCCCAAGGTGTTCAGAAGGATCAAATGGAATTGAACGTTCAAAGGACAGACAATTTAAAAGCTATGATACGTTGGTAACATCAGAGGAAGGTCCATTCCTCAGCAAGTGTAAACCATTGAAAGATCAACCAGATGATGCTTGCTCATCTTTGAAAACCTCAAAGGAAATTTTGCCAAAAGGTGGAGAGAGTGGGGCCATCATTTCTTCGAAGCCATTTCAAGCGCAAAACATGTACACACAGCCTTCTTCAACACTCATTCTCAAAGCTTTAACCTGTAACGGTGCAATGGATGTATTCAAGCACGACCGTCTAGAGATGTACGGAGACGCCTTCATCAAGTTTGCTGTCTCTTTAAACATGTACTGCGAGTCACCGCTGTTGAATGTGGGAAAGCTATCGTTTTATAGAGGTCTTCGGGTGAGCAATCGACAACTATTTTACCTAGGTCGTGCACTCGACATTCCTTCTTATATCTTCAACATAACATTCCAACCTCTCGTCACGTGGTGTCCACATGGCTTTAGAATGCTGAAGTCGAACACGCCACAAGATCAGCGTTTAAAATTACACTCAGCAGACCAAGAATTAGACTTGAGTGATAATGAAGATGACAGCTACGGAGAAGAAAAAGCTGGGGTCACAAATCCACAGCCCAATGCTTCAGTTGAAATCGACGGCCAAATCCATATAGTGGCTTCGGACAAAATGGTCGCCGACACTACTGAGGCAATTATTGGGGCATATTTAGTGACGACTGGAGTGAAGAGTACATTAGGGGTGATGAAGTGGCTTGGATTAGATGTCGCAGACGACGTGATCTCAGAATCTCAGAAACTCATTACTTCAGCGTTGAATCAAACTTGTGATCCTGAGTCAGTAAAGAAAAATGACTATGAGCATCTTTACACAAAAGGTGGCTGTCTTCTTAATAATGAACCGTTAGGGTCTGAGTTTCAAGACATGGAAGCTACCATTGGTTACTCCTTTAAGAACAAACTTTTACTTCTCCAAGCCTTCACCCACATGTCTTATCCACGTGACTTGAACCATTTGCACACCAGTTACGAGCAGTTGGAATTCCTCGGTGATGCCCTGCTGGATTACCTGGTTACCCGTCATTTGTACTTCACTCATCGAACCATGTCGCCTGGGGCTCTGACAGATTTGCGGTCAGCGGTTGTTAATAGCTACAGTTTTGCTTTCTTGTCAGTTCAGCATGGTTTTCACAAGCACCTGCGGTCAATGTCGCCAGCCGTTTTTAGAGTTGTCAATAGATTTACTGCAATGCAGAAGGATGCGATCAGGAAGAAGATGCTTGCAAACCCAGACAAGATCTTCTCATGTGTGTTCGTCACTCCTGACGACAACGATGAAAACAACGACAGCATTGAAGTGCCTAAGGTCTTGGCTGACATCTTTGAGTCAGTTATTGGAGCAGTCTTTATTGACAGCGGCATGGATGTAGAAAGAACTTGGCTTGTTGTTTACCATTTGCTGAAGTCCACTTTTGGTAAGATTAACCATTATGCGGACAATCTTCCTTCTTCGCCAATCAGGCAACTACAAGAAATGCTACCAAATGACGTGTGCTTT

Transcript

Actinostola_17279

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00636	Ribonuclease_3	Ribonuclease III domain	Family	Interproscan
PF02170	PAZ	PAZ domain	Domain	Interproscan
PF03368	Dicer_dimer	Dicer dimerisation domain	Domain	Interproscan
PF20931	Dicer_platform	Dicer, platform domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000999	Domain	Ribonuclease III domain	Interproscan
IPR003100	Domain	PAZ domain	Interproscan
IPR005034	Domain	Dicer dimerisation domain	Interproscan
IPR036085	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR036389	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR038248	Homologous_superfamily	Dicer dimerisation domain superfamily	Interproscan
IPR048512	Domain	Dicer, platform domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14950	DICER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004525	Molecular Function	ribonuclease III activity	Interproscan
GO:0004530	Molecular Function	deoxyribonuclease I activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006309	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0016442	Cellular Component	RISC complex	Interproscan
GO:0016891	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0031054	Biological Process	pre-miRNA processing	Interproscan
GO:0090501	Biological Process	obsolete RNA phosphodiester bond hydrolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-