Gene detail

Detailed information of Actinostola_17266 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_17266	ORF PROTEIN-RELATED	scaffold56_size818591	185361	198245	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_17266

ATGGCGAAGTACAGCAAAAAAAAGAATAAGAAAACTCCAAAGAAAAAACACAATTCTAAGGTGAAGAAGCTCATAGCTATCAACGCAAAAACCTTGTCCAAGGCCCAGAGGAAGCACATTAAAGATTTCGGAGAGCTTCATCCCATAGATTCAAGTGATTCAGTTACAGATAATAAGAACGTTAGGAAAGTTCAATATGTGGAGTCCACAGAGGATCTGGACTCAGAAGAAGAGGAGAATGCTTACCAACAACTAGTTGGTTCTCTTGGTGCAAAAGTGATGCACCCATTCCTTGAACGTATGAAAGAAGAAGAGCAAGAGATGGATGATAGTGATGAAGATGATGATGATGATGATGATCATTTTAATGAAGAAGTATCTGAAAATGAGTTAGACTTGGAGGAATATAATGGAGAAAGGAGAGAAGGAGTTGAGACTAGCAATGGAGATCTTGAAAAGGGTGATACAAGTATGATTGGAGCTGGTGGTGTGGATGATGAAGATGAAGATGATGATGATGACAATGATGACTACAGACAGGCAAATAATGATGACGATGTTGAAAGTGACACAGAAGATGTTGATACAAATCAAAATGTGCAAGGTAATTGTTCACAAGATCCCTTCACTGTGCACTTTGAGCAAGATTTAGATGAATCTATAGCAACAAAACTAACAGACAAGACATCCTTCCAGCAGTCAACTACATTGGTTCCATCACTAGGTACATTAACAGTATCTTCACCAACATGCAATGTTCCTGTGGTCGATACTTTACAAAGCAAAAGCCAACCCCTTTTTAAGGTGAAGGCAAAACTATGTCCAACATGGATGGCTTTGAATAAAACAAACGATAATCAGCTGAGTTTGCTTCTGAGTGTGTTTATTTATTCTACCACAGACCCCTTCTCGCCTGTACAAAGAGATTTATATAGATATATTGGTCGATATCAGGATGTGTTTTTTACCAACCGTAACTTTGACAATGGTGAAGAGATACGCAGGTTGTACTGCCTACATGCTGTCAATCATATTCTAAAAACTCGCTCTAGAGTGCTCAAAAACAATGCCAAGGTTGTCCTTGCTCAAAAAGAAAAGAAAGAATTAGAGGATCTCCGTGACCGGGGACTAACAAGACCCAAAGTCCTTATTCTGGTTCCATTCAGAGACTCAGTATTAAAGATTGTAAATATCATAATGGACTTACTTATCCCTGATGGACGGGGTCAAGTAATGAGTAAGAAGAGATTTCTAGAAGACTATTCAGAGTCTGACGTGACTGATTCAAAACGAAGCTTTCGTCCAGACGACTTCGAGAAAATGTTCACAGGAAATATTGACGACTGTTTTCGCATTGGCTTGTCACTCAAGAAGAACTCCATTAAACTGTACAGTCAATTCTACTCATCTGATATCATCATTGCTTCACCGTTGGGACTACGCACTGTCATCGGTTCTGAGGGGGAAACGTTTGGTGACTTTGATTTCTTGTCGTCGATTGAAGTATTGGTTCTTGACCAGGCTGATGTATTCCTTATGCAGAACTGGGAACACGTACAGCACGTCTTTGATCATCTTCATAAGCAACCTAAAAGTTCACATGATGTGGATTTCTCTCGTGTGCGTAACTGGTGTCTCAACGGATGGTCCAAGCTCTACCGACAGACTCTACTGTTCAGTAGCTTCATCTCACCGGAATTGAATTCCTTGTTTAACAAGCATTGCTATAATATCCTTTATTGTATAGCACAGATACTACGCGCGCTCTTATTGATAAAAGCACAAATCCGTGACTTACCAGGCTCTATCTGCCAAGTTGTGACACAGGTACCCCAAGTTTTCCATCGAATCGATTGTGTTTCTTTTAGCGAGGCTCCTGACAAACGCTTTGAATTCTTTACAAGCAAGATTCTTCCAGAGTTTCGTGGGCAAGGCGAAGGCTACACAGCCGTCTTCGTACCTTCGTATTTCGACTTCGTACGTCTCAGGAATTACTTCCGTCGAGAGGAAATATCATTTGCGCAAATCTCAGAGTACTCCAAAAGGTCGGACATAACGCGAGCAAGAAACTGGTTTAAAGAAGGCATAAAGGTTTTCTTGTTGTACACTGAGCGATTTTACTTCTTTTACAGGTATCGAATGCGAGGCATAAAGAACATCATCTTCTATGGACTTCCACATTATGCGCATTTTTACCCCGAAATCCTCAACTACCTTGATACTGGGCATGAATCGACAGCAGTCACTTGCACAGCGGTGTACAGTAACTATGACAACCACAGATTGTCTGCAGTCGTTGGTAGTCAGCGGTGTAGTCACATGATTTCGTCCAATAAGCACGTGCATATGTTTGTGACTGGAGAATAA

Transcript

Actinostola_17266

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06862	UTP25	Utp25, U3 small nucleolar RNA-associated SSU processome protein 25	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010678	Family	U3 small nucleolar RNA-associated protein 25	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12933	ORF PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-