Gene detail

Detailed information of Actinostola_17122 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_17122	RNA POLYMERASE-ASSOCIATED PROTEIN CTR9	scaffold556_size281279	42166	78091	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_17122

ATGGCGTCCTCCATTGAGATCCCTCTTCGTGACACAGACGAGGTGATAGAGCTGCAATTCGACCAGTTACCAGAGGGAGAAAGAACTACTCACAATCTTGAAACAAGAAGATGTTCGACTCAACATCTGGACGACATTGGCTTTCCGCGTGCAGATATTGAAAACAATGAATCACATGACTTTATGCTCCAGTATTATAAACAGGGAAAAATGGATGACTTTGTCAAGATCTTGGAGAATGCAAGAACTGGTGCAAACCGCTCGTACCCTGACAGCCAAAAAGACCAGATGGCCTGCTTGGACACTTTGGCAGCATTTTATGTTCAGCAAGCAAGAAAAGAAAAGAATAAAGAGGCAAAGAAAGAGCTTTTTACACAGGCTACGTCACTGTACACCTTAGCAGACAAAATTATCATGTATGATCAGAACCATTTACTGGGAAGAGCGTACTTCTGTCTTCTTGAAGGAGATAAAATGGAACAAGCTGATGCACAGTTCAACTTTGTACTTGCACAGTCAGGAAACAACATTCCAGCATTATTGGCGGCAGTGCGACTAGGAATGGGTCACTGTTTTGTCAAACTCAATAAATTTGACAAGGCCAGGCTAGCATTTGAGAGAGCCCTTGAACTGGAACCACGCTGCACAGGAGCAATGATTGGACTAGCAATATTGGAATTAAACTCCAAAAAGCCTGACTCTATCAAAATAGGTGTTCAGCTACTATCCAATGCTTACACTATTGACAGCTCTAATCCAATGGTTCTCAATCACTTGGCAAATCATTTCTTCTTTAAAAAGGGAGACTTTGACCAGGCTTTCCAGTACTACTACCAGGCTACTCAGTTTGCTTCTCCTAATTTCATTCTGCCATATTTTGGTCTTGGACAAATGTACATTGCAAGACGAGACTCAAATAATGCTTCTCAGTGTTTTGTAAAAGTTCTGAAGGCCATGACAGGTAATTATGAAACAATGAAGATTCTTGGCTCACTGTACAGTCAGTCTACAGACTTGGACAAGAGAGAAGATGCCAGAGATCACCTTAGAAAAGTAACTGAGCAGTATCCTGATGATGTTGAAGCTTGGATTGAACTGGCAGGAATCCTGGAACAGTCTGATGTCCAGGCAGCACTAGAGGCCTATGGGACTTCATCCAACCTATTGAAGGAAAAAGTCCAGGCAGATGTACCACCAGAGATTCTCAATAACGTTGGAGCACTGCATTTTCGTCTGGGGAATCTAAAAGAAGCTAAGAGGTTTTATGAATCAGCTCTTGAACGATCCAAGCAGGAATCACATAACGATGAGGGTTACTATAACGCTATATCAGTCACCACTAACTACAACCTTGCCAGGCTGTACGAAGCCATGTGTGAGATAGAAAAGGCAGAGCAGTTGTATAAAAGTATCCTGAGAGAACATCCAAACTATGTTGACTGTTACTTAAGGCTTGGTTGTATGGCTCGAAATCGTGGGCAAATTTATGAGGCCTCTGATTGGTTCAAAGAAGCATTACAAATCAATCAGGATCACCCCGATGCTTGGTCATTAATTGGTAATCTTCACCTGGCTAAACAAGAATGGGGCCCAGGACAGAAGAAATTTGAACGAATCCTCAAACAACATTCCACGGAAAATGATGCTTACTCGTTGTTAGCACTTGGTAATGTATGGCTGCAGACGTTACATGCACCGTCAAGGGACAAAGACAAGGAAAAGAGACACCAGGACCGTGCATTGTCCTTGTACAAACAAGTACTAAGAAATGATGGAAGAAACTTGTATGCTGCAAATGGCGTAGGTTGTATACTCGCTCACAAGGGATATCAACGAGAAGCACGTGATGTGTTTTCACAAGTCCGTGAAGCAACAGCAGATATCCCAGATGTTTGGTTAAACCTTGCCCATATCTATGTGGATCAGAAACAATATGTATCAGCCATACAGATGTACGAAAACTGCCTCAGGAAATTCTACAAACACTATAACACAGACGTCATGGTGTACCTAGCTAGAGCCTACTACAAGATGGGAAAACTACAGGAATGTAAACAAGTGCTTATCAAGTTAATATATGAATGTGTTTTAAGGAATTTTTCATGGTTGAGTCACCATGGAGACCGTATGAAATTTGACCTTGCCTGGGCAGCATTTGAAGTACGACATACAAGTGACTTGTTGAGTCAAGCACAGCACCATGTCGGTAGAGCACGTAAACTGGATGAGGAGGATCGAGAACTAAGACGTAAACAAGAAGAAGAGAAAGAGGCAATTAGACGAACAAGGGAAGAAGCTTTGCGATCAAAACAAGAACTGAAAGAACAGCAGGAAAGAGAGTTGTTAGAAAAACGTCAGCAGTTTGTAGAAGCTACAAAAAACAAACTGGTCTTTAATAACGAGCCTGAGGGAGCATCAGAAAAGAAGCGAGGAGGAAGGAAGAAAACCAAAGACGATGATTTCGTTGACGATTCTAGCAGCGACGAGAACGAAGTTGGAGAAAATGGAGAAATTATACCAAAAGAAAAAAAGGACAAGAAAAGGAAAAAGAAGCGATTCTCAGAAGGAGGCGAAGAAGCACACCCAGGTACTAGTGGTAATGTATCATTGTATTGCAGACAAGCAAAACCAAGAAAACCACGAGCTAAGAAACAATTCAAGAGAACAGAGGAAAGATTAACCGCTAAACAAAGACTGAAAATCAAGTCAAAAGCGTATATTTCCTCCTCTGATGACTCGACAGACTCCGAAACAGAAAAACTGAAAATAACAGACATGGGAAGCGACGAAGAAGGAACGCCCGCTACTGCCGCAAAATCAGATCCTGGCCTTGACTCTGGTTCAGACAAGAAAGATGTGAGCAGCGATGAAGACATAGAAGAAACCAAAGTATCTGACGAAGACAGCAGTAGTGACGACGACAAGTCTCCGAGAGGAAAAAAACGCATGATATCGAGTGATGATGATGATGGTAGTAGTAGAAAGAGCGAAAATGACGATGAAGAAGCAGGACCAAGTGAGCCGTCACCCAAGAAAAGAACAATTAAACAGCTTGTCAGCTCGTCAGAATCAGATGAGGACTAA

Transcript

Actinostola_17122

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF14559	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR031101	Family	RNA polymerase-associated protein Ctr9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14027	RNA POLYMERASE-ASSOCIATED PROTEIN CTR9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-