Gene detail

Detailed information of Actinostola_17025 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_17025	AP COMPLEX SUBUNIT MU	scaffold544_size283834	27723	38672	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_17025

AATGTCGAAGGAACAAATTTTATCTTCATCAAGAGAAATGGTCTCTATTTTGTCTGCACATCTAAGTTCAATGTTTCTCCAATGTATGCTGTTGAGATTTTATCCAGGATCTGTAGCCTTTGTAAAGACTACTGCGGTGTTCTCAATGAAGATTCAATAAAGCGCAATTTCCCATTGATCTATGAATTATTGGATGAAATCCTGGATTTTGGATATTTACAGGCAACGTCAACCGAAACATTAAAAGCATATGTCTGTAATCAACCAGAATTAGTAGAATGTGCTGATAAATCAGTATGGCAATGTAGTGGTGGGACTGTGTATGGTACAGACAAGATGTCACTGCCCAGCTCTGCAGCTAATAAACCTGTAATACCACACAATACCAAGTTTTTTCAGAGCCAAAAGAAAGAGATATTTGTAGATTTGTTGGAAGGGCTGACGGTGCTAATTGGATCCAATGGTAACATTCTACGCACTGAAATAGATGGTTGTATCAAAATGAAAAGCTTCTTGACAGGGAGACCTAATGTTAGAATAGCTTTAAATGAAGATCTTACTATAGGCTCTAAAGTCATGCTTCCAACAGTTTCTTCAATGGGCGTTCAGGTTGATGATTGTAGTTTTCATGAGTCTGTTGATTTAAATGAATTTGACTCAACTAAAACACTGACAGTTTCGCCCACAGACGGAGAGTTTACAGTAATGCAGTACAGAATTTCTGGAGAACTTCATTCTGCTTTACCTTTTAATCTCATAACCTTCGTGGATGAACATGAAGCTTCTATGTCAATGGAACTAATTCTAAAACTTCGATGCAACATCCAGCAAAGTAGTTATGTCAATAATGTGGTAGTTAGAGTACCTATTCCAAAGTCAACAGAGAGTGTGTCACACTCCTCATGCCAGGCTGGACAAACAGGAGAATACAAACAATCAGAAAAGATTTTCTACTGGAACATCCGTAAAATCCAGGGGGGTGCAGAGGTGTCGACTTCGATCAAGATAAACTTAAAAGATAAATTGAAAACTGCCAGAAAAGAAATCGGTCCAGTGAGTCTAGATTTTGAAATACCAATGTATATTTGCTCTGGGATGAAAATTCGTTACCTCAAAGTGTTTGATCAAGGAAAATCGTCGAATCCTTTGAAGTGGGTTCGTTCACTAACTCACAGGTACTGTAACGTAGTTTTGAGCTATTTACTCGAAGATGTCAAACGACATGCTAATACCAACAAAAAAGAAGAAACCCCAAGTGAAGAAAAGCCACGGGCAAGTAACAACGAACCCTATATGCGTCATTTATATCCCTCGGTCAACTCCAACGCTCCTTCAACTCTGGGCAACATGTGGACAAACTGGGACCCTTTTCTGTGCCCCTTTTCATGGATGCCTTATGGGGGTGCAGCAGGAGCTTATACTATGCCCAACACACCTTCATATCAAGCTCAGGGATACTATGGAAAAGATGGGCTTCAATACTATCTTCCTCATTACGCTCCAGTGCCACCGTCCGCTCCGTATTCCTACGAAGACGTTTGTGATGGAAACCGCATCGCTACAGTAGCTCATGGTAATCATTTCCTCATTGTAAGTCAGGTTGTTTTTTGGTTTTTCTTGACAATCTATTTTATTTCATTGTCAGAAAATACAGTAGTTGCCTCTGGCCCAGTTTCTTTGGCTTCACAATATACGCCGTCTGCTGTCATGATGAACAACTCCCTGCCTCCTGCACGTGATGCCGTTTCTACGGGAAACAGTTTCCATGGTAATACTGACGTAAGCAAGAGTGGTCTACACGGGAACCGAATCTTGGGGAATGCGTTCCGTTTGCATGAAGAAGCGAAGAAACCCATTGCAGCTCAAACTGCTGAAGTCAGCACCACTTCAAATTCTCGTACTGCTAGCGTACGTGATTGGAAGAGCAGCGAGGAACCAGTTGACGGACTCAACCAAAGTAACAAGACACTCAATGAAACGAAAGCTGAAAAGCTACGAGGTTTTGATCATGACAAAGGCTCGATTATCCAAGACTACAAGAAAATGAAGTTTATGACAATGAATGGCGATAAGGACTAG

Transcript

Actinostola_17025

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001392	Family	Clathrin adaptor, mu subunit	Interproscan
IPR011012	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR028565	Domain	Mu homology domain	Interproscan
IPR036168	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR050431	Family	Adaptor complexes medium subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10529	AP COMPLEX SUBUNIT MU	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005802	Cellular Component	trans-Golgi network	Interproscan
GO:0006605	Biological Process	protein targeting	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131	Cellular Component	clathrin adaptor complex	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0090160	Biological Process	Golgi to lysosome transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-