Gene detail

Detailed information of Actinostola_16790 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_16790	SORTING NEXIN 17 AND 27	scaffold519_size293232	133805	156253	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_16790

ATGGCGGACGACGAAGAGGAGGCGAAGCAAGCAAAAGATCAAATTGTGAACGAATCCAGGTTGATCGAGCTCACCAAAGGAACTAATGGGTTTGGATTCAATGTTCGAGGCCAAGTGTCCGAAGGAGGCCAGCTAAAGTCTATAAATGGCGAGCTGTATGCACCGCTTCAACATGTTAGTGCTGTAGTTGAAGGGGGTCCTGCTCACATTGGAGGTGTACTAGTCTATGACAGAATACTTGAAGTTAATGGTGAAAACGTGGAAGGTGCAACCCATAAACGTGTCGTTGATCTCATCAAAAAAGGAGGATCTCATTTAAAGCTGGTAGTGATATCAGTCAGTCAAACGGAGTCAGAAAAGTTGGATAGCGACAGCTCTTCGGGAACAGAATATTATGATTATTCTGATAGACAGACGGCCCCAATAACAATACCCGAGACACGGCAAATCCAAAGTGGGGGAGAGAGTTATGTGGTAAGTATGGTTCCCCCAGTGTGCACACTACCCATCCCATATCCCATCCCATATTCCATCCCATCCCATATCCCATATCCCATTCCATCCCATATCCCATCCCATATTCCATCCCATATCCCATCCCATATTCCATTCCATATCCCATATTCCATCCCATATTCCATATCCCATATCATATCCCATATTCCATTCCATATCCCATCCCATATTCCATATCCCATCCCATATTCCATTCCATTAGACATTTCCCATTTAGTGTATAACATTTATTATTCAAATAAGCATATTTGTTCCAAGAGATATAAAGAGTTTTCCAACCTTCATAATCAGTTGAGAAAGGAGTTCAGAGATTATCAATTTCCCAAATTTCCTGGCAAATGGCCATTCCATTTATCAGATCATCAGCTTGAGACCAGACGTAAAGCCTTGGAAAGTTACCTCCAGCAAGTGTGTTCTGTACGAGTATTAGGAGATTCTGAATATGTTCATGAATTTTTGGAAGAAAATGATCCAAAGGAACAGGATGACAGTCAAATGGAGGTGGAACTAAGAATACTAATGCCAGACAACACAACGGTAACAGTTGGAATACAAAAGAAATACAAGACAAGACAAGTATTCAAGGCATTGGTCAAAAAGATAGGATTACACGAAGAACATTACATTAACTTTGCCCTTTTTGAAATCATGGACAGTGGGCTTGAGCGTAAACTTCGCAAGAATGAATTTCCCCACAATCTTTACATCAGGAGGTACACAGAATCATCCAATACATGTCTTACTATAAGGAAATGGGTCTTTACTCTATCAAGGGAAGTTACAATGAGTGACGACGATGCTGCAGTTAATCTACTTTATTACCAGGCTGTGGAGGATTTCAGGACAAGAAAGTTACTGCCTGGAAATTTGTTGGAAAAGCTCAAGGAATTGAAAGATTCATCTAAAAAGCTTGAGTATCTTGACATTGCCCGGTCTCTCGAGGGATATGGTCAAGTAACATTCCCACACTGTCCATGTGATGCAGCGCAAGGGGCAGGTCATGTCATCGTATCGGTTTCTTTAAAAGATTTTCAAATGAAGGCTTGTACAGAACAAGGAGACAGAGTTAACCTTTATTGTACATTAACTCTTCAGGATCAAGAACACTTGCTTGGCTGGGAAGAGATAGCACAATGGGAAGGCGATACAGAAGCCATGGCTTTTTGTTTTCAGTACACTAAAGGTGGTAATATGAGATGGGTGAAAATATATTCGGAACATTATGAATTCATGGCAGAATGCGTTGACAGAGTGATGCAAGAAATAGAATGGAATAAAAATGTAGGTCCACTTATCAACACCATTGCCATCATCACCACCACCACCATTGCCAAATATATCATCATCACAATCATCACCACCACCACCATCATCACCACCATTGCCATCATCACCACCATTGCCATCATCACCACCACCATTGCCATCATCATCATCACAATCACCACCACCATTGTCACCATCATCACCAACATTGTCATCATCACCATTGCCATCATCACCACCACCATTGTCATCATCACAATCATCACCACCACCATTGTCATCACAATCACCATTGCCATCATCATCATCACCACCATTGTCATCATCACAATCACCATCATCACCACCACCATCACAATCATCACCACCACCACCATTGTCATCAGCACCATTGTCATCATAATCACCACCAGTGTCATCACCACCACTGTTATCATCACTATCACCATTGTCATCATCATCACAATCACCACCACCACCATTGTCATCATCACCATCACCCCTCCCCTCCCCCAATGCAGACATATACACATGCTATTTCATTAG

Transcript

Actinostola_16790

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF00787	PX	PX domain	Domain	Interproscan
PF00788	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF18116	SNX17_FERM_C	Sorting Nexin 17 FERM C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159	Domain	Ras-associating domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR001683	Domain	Phox homology	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR037827	Domain	SNX27, atypical FERM-like domain	Interproscan
IPR037831	Family	SNX17/27/31-like	Interproscan
IPR037835	Domain	SNX27, RA domain	Interproscan
IPR040842	Domain	Sorting nexin-17/31, FERM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12431	SORTING NEXIN 17 AND 27	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:1990126	Biological Process	endocytic recycling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-