Gene detail

Detailed information of Actinostola_16760 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_16760	SIGNAL RECOGNITION PARTICLE 72	scaffold514_size296446	222332	247140	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_16760

ATGGCGGCCACGTCACCTTCGATACCACAGTTGTTCACCGAATTAGAGAGACTTCGCAAAGAAGGGAGCTACTCTAAGGCACAGAAAATCGCTAACAAAATTTTACAGGAAGATCCTAAGGACTCTGATGCCTTCCATTGTAAAGTTGTCTGTCTGATTCAACAGTCATGTTTTCGGGAGGCTTTTGAAGTGATTAACTCTGGATCCAAGAAAGGGATTAAAGAATTGCCATTTGAAAAGGCATATTGTCTTTATCGACTAAACAAAACTGATGAAGCACTGCAAATCCTCAATGATGTCCCTGACCAAGGACAACGAGAAAAGGAACTTACTGCTCAAGTGTATTATCGTCTTGGAGAGTATGACAAGTGCAGGGTTATCTACAAAGATTTGATTAAAAATTCCCAGGATGATTATGAAGATGAACGAGAAACTAACTTATCAGCTGTGGCTGCTGCATCCAGTCAGTGGGGGAAAACAAAACTGACTGAGAGCGGCCTGCGTGAAGACACCTATGAGTTATGCTACAATGCTGCATGTTTGTCTCTTGCAAATAATGATTATAAGACAGCAAAGAACAAGCTCATGCAAGCTGAAGTTCTCTGCCGCAAGTCTCTTGATGAAGATCCAGAAACAACAGAGGAAGATGTTGATGCTGAACTAGGTGTTCTAAGAACACAACTTGGCTTCACACATCAAATGCAGGGAACAAATGATGAAGCAATGAAGCTGTACAACCAAGTCCTTAAATCCAAACCAACTGACATTGCATTGGCAGCTGTTGCATCAAATAATGTCATTACTTTGAATAAGGAAAGAGACTTATTTGACTCCAAGAAGAAGATCAAAGCAACAATGGTTGAAGGTCTACAAAACAAACTGACTGAACAACAACACCAGTGTTTACAGTTTAACCAGTGTCTACTGCTACTCTACTCAAATCAGTTGGATGCTTGTAGATCACTGATTGCAGCCCTGGAAGGAAAGTATCCTGACTGTGACTTCCCTTGTCTGATGAGAGCTTCACTGCTACACAGAGAGAAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAACGCTCAAGGTAACTATTGAACAGCATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGCATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGCATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGCATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGCACGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGTATGATAAAGCCATCAAAATGCTCAAGGTAACTATTGAACAGCACGATAAAGCCATCAAAATGCTCAAGGAATATGCCCGAAGTCATCCCAAAACATCTACTAATGTCAAACTGACTCTGGTACAGATGTGTCTTGTTCAAGGTAACCTAGAATCAGCCTGCTCCACTCTAAGTTCTATTGAAGAGCTATGCCACAGACCAGGAATAGTATCAGCGCTAGTAACACTACATACTCATCTTGGAAACATTGACACTGCCATTGCAGTTCTTGATTCTGGTGTAACATTTGCTCAAGAAAATAAGGGTGCTCTTACCCAGTCTGAGATCATTAGTCTTATGCGTGAAAATGTTGCTTATAAACTGACACATGGTCGCGCTAAAGAAGCTGTACAGATGCTTGAAAGACTGCACAGGGAGGATCCACATAATATGAAGACACTCGCACAGCTAATCACCGCCTATTCACAAGTAAACCCTAAAGAAGCTGAACATGCTTGTTCACCCCCTATTTTGAAATGCGCGCCTGAGGCTAACTATTACCAGGCCCCCCAGTATTTGATCAACACAGGCAGCCCATATTCCTCGGTACATGAGTATACACCAATAAAACCAATTGTCCTTAACACAGTCAATAGATACAGTGAAAAGCTTCCTCAATTAGAGCAGGACACTGATGTTGATGTTGATTCACTAGAGGTCAGTCCTGGGATGCGGTTTGGTCGTCAAAAGCGCACTGGAGATGACATGGGCCAGGACAGCTCTGATGTGATTGTAAAAAAGAAGAGAAGAAAAAAGAAGAAAGGTAAACTTCCAAAGAACTACAATAATGAAGTCGACCCTGATCCTGAGCGTTGGTTACCCAAGAGAGAACGGTCATACTACAAGGGGAAAAGACAAAAAAAGATTGCTGTTGGTAAAGGAACACAAGGAACAGCTGTCACAGGAGTAGAA

Transcript

Actinostola_16760

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08492	SRP72	SRP72 RNA-binding domain	Domain	Interproscan
PF12895	ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013699	Domain	Signal recognition particle, SRP72 subunit, RNA-binding	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR026270	Family	Signal recognition particle, SRP72 subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14094	SIGNAL RECOGNITION PARTICLE 72	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005786	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312	Molecular Function	7S RNA binding	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0048500	Cellular Component	signal recognition particle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-