Gene detail

Detailed information of Actinostola_16388 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_16388	GUANINE NUCLEOTIDE EXCHANGE FACTOR	scaffold487_size603084	347715	423447	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_16388

ATGCGCTCTTCAACTAGGATCTGCGAAGAGCAAATTCTGTACCTTGGTTCGCTTGCTCGACAGTACTTCATACTAAAAGGCCAACTCTACCTGAAAGCAAATGACACCGGGAAATGGCATTTGAAATGGGCTGCTCTTTACCAGAACTTTATCTTCTTCTTCGAAAGCGAAGAGTCTGCCAAAGTTACGGGAGTTATCTTGCTGGAGCATTCGACTTGCGAACACTCATGCCTAGTGAATGCGAAGGACATGGAAAATCAGAATTGCTTTACTGTGGATATTCCCCTCGGGGATACCCTAAAACAGACTATATCCCTAAGAGCAAGTTCTGAGAAGCAGTGTACATCATGGATAGAAAACATCAGAAAATCAAGTTTTTCTGAAGTTACCTCTATAATGAACGAACTGGATGAAAAATACAACCACTTGGTTCAAGTCATGGAGAGTGAGAAAACAGCAAAATGGCAGTTGATGCAGCACTGTGATGACCAAGTTGAAATTATAACTATTTTGAGGGCTGAGATTACTACGCTTCGGCAGAAGAAATCAGAAAGTTCCACAGAAGAGGAAAGCGAGGAACTTAAAAGCATCAAAAAGGTCCAAAGCCTGATACGTGGCTGGTTGTGTCGTCGTCGATGGCACAGCATCGTACAGGACTACATCAGGTCTCCCCATGCAGAGAGCATGCGCAAGCGCAACTCTATCTGCTTCCACTTGGTAGAGACTGAAGAAGAGTATTTAGAAAACCTATCTACTTTGGTATCGTGTTTCTATCGGCCATTTAAAATGGCTGCCAGCTCAAAGCGTCCTCCGTTATCGCACGAAGAAGTTAACTCGATTTTTCTTAATAGCGAAACTATTCTCTTCCTTCATCAAATATTCCTGAAAGGTTTGAATACAAGGATGGAGAGTTGGCCAACCTTGATCTTAGGCGATCTGTTTGATATGCTGCTTCCTATGCTAAGTATCTACCAAGAATACGTACGTAATCATCATTACAGTCTACAGACGTTGACAGAATGCAAGCAGCGCTCAGCGTTTAACCGTTTGCTCAAGCTGTACGAGGAGAAACCAACTTGTGAAGGAAGAACGTTGGAGTCTTTCCTGACGTATCCAATGCATAGAGTCCCGGCATACATCATTACTCTGCACGAGCTGCTCTCGCTGACTCCTCATGATCACGTGGAGAGGAATGCTTTGGAGTATGCGCAGAGTGTACTGGAGGACCTCTCCACGGTGATGCATGACGAAGTCAGTGAGACGGAGAATATTCGGAAGAATTTGTCGATTGAGCGTCAAATTGCAGAAGGATGTGAAATGCTTCTCGATGTTAACCAGATCTTCATAAGACAAGGAAGCTTAATTCAAGTGACCGAAAGTCGTAAAGGAAAGACGTTCGGCGGGATTTCTCTCAAGTCTAGTGAAACCCGTAAGGAGAGCGTTCGACAATGTTTTCTGTTTTCGAGTTACTTGTTACTTACTACTCGTTCGTCGAGTGGTCGGCTTCACCTCGGGAAGAACAGTTCTATTGTCTCTCTTGTTGACGCTACTTTGGTAGACGACTGTTTTGACGAAGACGAATTGGATGGCGAAATGCTGTGCGGTGTGCGCTCGGCTCAAGACTTCAACGACGTGGACGACCTTTCTTTCAAACTCATCGTAAAGTCACGTGACAAAGAAGGAAGTGTGCTGACCATTACGCTAATGGCACCGTCGGCTCAGGAGAAAGCCGCGTGGACAAGCGACATCAGTCAGTGCATGGAAAACTTGTCATTAGTGGAAGATGCTGACACAGTGTCTATAACTTCACGACAGAGCCTGGCAAGTGTTAGATCGGACTCACGACTCTTTACGGACGACATTGACATCAAGTATTGCAAGGCACTCAACTCATGCAAGTTACCCAAGGTATGTCAAGTTACCCAAGCGTTGCCGGCATTTTCCCGATTTGCCAGCCATGCCGATGTGCCGGCCATGTACCGGGTGTGCCGGCCATGTACCGGCCCTGTTCTTGAACTGGAAATGACTGGCAGCATTAACCGTATTATGCTGATGATGATGACGATGATGATGACGACGATGATGATGATGATGATGATGACGATGATGATGATGATGATGATGATGACGACGATGATGATGATGATGATGACGACGATGATGATGATGATGACGATGATGATGACGACGATGATGATGATGATGATGATGACGACGATGATGATGATGATGATGATGACGACGATGATGATGATGATGATGATGATGATGATGACGACGATGATGATGATGATGACGTACGATGATGACGATGATGACGACGATGATGATGATGATAGCGATGATCTTTCAGATCCATGTATAATGATCGTGTTGTTTTATAACTTTCAGATCCGTTATGCAAAGCTAGAAAGACTATTCGAAAGACTCTTGGACATCCGTTTCCTGAGTATTGACTTTCTTAACACGTTTCTCATCACGTATCGCGTGTTCACGCAAGCCACGAACTTACTCGACACACTTATCCAGTTTTATTACACGCGTAACACACGCGACACGCCGTCTCCTTTGAGTGAAGTATTCTCTCCAATCGCGAGGAAAGGGAGGTCTGTTTCTCTTCCTAACGACCGGAGCAACGAGAGACGCCAAGCTCAACGACTTCGTGAAAGGAAAGCCTCTCCGCAGGAAATATCCATCACAGTGTCTACCGCCAAAATGCCGAATTCCAAAGATTCTCAGATCTCTACCACTGACGAACCAGAAAAGACCCCTTCTCGCCTCATGCCAACATCGTACCATTACCGACGCCATTCGTCCCCATCTGTCCTGGGTGACACGGCAACGTTTGAGTTCCCTGACGTCACGTGCGATGACGTGCAAAGCCCGACCGACGAGGTCCCTGAGAGCAAAACAAGAAATCAGAGCTCGCCTTTTCTTACGTGCGGCAAGTTACGTTTACGCGCGCAGAGCACGTGCAATGACACGGTTCAACGCCCGTCGTACAGCATTTCCTCTAGCATTTCATCCAGCGATGACGAGAACGAACCGTTTGAGCTTGAGGACCCTCCTAAGTTACGCACTAGACATCGTGCGTGTTCCTCGGGACAAATTCTTATCACGTCCCCGACTGTGGATGAAGATTCTGGGTCGGAGTCGAACATCGATCCGTTCGGTCCGACAACGACGTTAAGCACTCCACATAGCATCCCACTTATAGGATCGTCATCGTCACACTGTCTTCGCCAAGCCAGTCCTGACCATGAAAGCCCCATCGAAAAGGCTAAGAACAAGGTCCTTAGTATCATGGGCTTAGCGTTAGAGTCAGACGAAGGCCCAGATGTCTGCGATTCCCCAGGAGTACCCCCCTTAGTCGCTGAAGAAGATGTGACGCTAAGTCCAGAGCTGCCTCGGGCCTCGTTCGGCAGCCGTCGGCCCAGTTCTCCCTCGCGTTTTGCTAAACTTGCGAAAGAAGCTGAGGAACGCCTGTCAGGAACCACATCCCCACGGCGGCCCAGTTCTCCCAACTTGCAAAGACAGGATCGTCGACCCAGTCTCTCAACGTCGCCTATCAACTCTCCCCGGTCCCCTTTATCACCCTCGGCTAATTGCGTCAATGCCGGGGTGGTTGTGACGTCATCTAAACCGTCCAGACGTAGGTCAAGTATTTCTCAAGCCGCTGCTGCGTTTGCTGCTGCTACTGCAGGCGCATCTCCTTCGCCGAGTTATGGCGTCAGCTCACCAACACTACAAAGATTCCGATTTGGTCTGACAGTACGTCACATCCTGTCACATGACACACATCTTGCTACGATGAGAGTCCTTACAGTATTACGTCACTGGGTGACGAAACATCCCGAGGATTTCGTGAGGGATGCCATGCTTAGAGAACAACTAATCTCATTCATGGAGGAAATACTACATCACGATAGCTCCTCGAATCTTGAACAAAAATTCGCTGCAGCTATCATCAGATCGCTTGCAAGGAAACCCGGAAACTCGAACTTCGAAAATCTTTTGTTAAAACAACCGTCACATGTAGATCCAAACAGCTTTGACAAGATTTCCGCCACCCAGCTTGCAGAACAACTAACGTTCATTGAACATCAGCTTTTCTCGAGAATTCCTGCTCATGAATTTCTTAACTTGGCATGGATGAAGACCAATAAAAACGTACTGGCGCCGAATATCTTACGAGTGAGCCAGCGGTTTAACGAGGCCAGTGCATTAGTTGCATCTGAAATCCTGAAGCGTCAAACTCCGTCGGCTCGCGCCACAGTCATCGAAAAGTGGGCCAACGTAGCTGAGGTCTGCCGAAACCTGCACAACTTTAATTCCGTCTTGGAGATTACCTCAGCTTTTCTTAGCAGCTCTGTCTTTAGACTAAAGAAGACGTGGGAAAAGGTCTCCAAACAGGCTCGTTCACAAATCGATAAACTGCAAAAGATCGTCAGTGCTGAGGGTCGTTTTAAAAACATGCGAGACGCCTTGAGATGCGCCGATCCACCGTGTGTACCGTATCTTGGTTTCTACCTCACCGACCTCGCTTTTATCGAAGATGGAACGCCTGACTGTAACGAAGAAGGTTTGGTCAACTTTTCAAAAATGAGAATGATTGCACAAGTCATCCAGGAGATACGACACTATCAGCATACAACATACACGATAGAGTGTGATGCAAAGGTGATCCATTATTTGATGACTAAGGACATCCTTATGGACGAGGAAACGCTCTATAAAACATCCCTCATACTCGAACCCAGGAAGAAGGGGTCTTCGACCAAGATCAAAACTTCCCCAGAATCTGAGGTTGCGCCTTAG

Transcript

Actinostola_16388

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan
PF00618	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan
PF00621	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR000219	Domain	Dbl homology (DH) domain	Interproscan
IPR000651	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR019804	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR035899	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-