Gene detail

Detailed information of Actinostola_15048 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_15048	TRANSCRIPTION FACTOR-LIKE 5 PROTEIN	scaffold38_size959577	681594	690446	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_15048

ATGAGTAAAGATTCGCTGAGTCACGAATGTGAGCCCACGGAAGATTATATCGACGTCGTAAGTCATGCCACAAAGAAAGTTCTCGTGGTCGGCAAGGCCATGGCGGGCGACATATGCAAACAACTCAGTGGTATGCCATTGTTACAAGATATTCCTGTTATTCTGTGTTCTTTGGACAATCTAGTGAGTATTTGCAGAAGAGAGAAGTTCCTTTTGGTTTTTGTGGATAAATTCTTTGACGAGAACTGCATCGCTGAAATATGCTCCACTATAAGATTCAATTCGTCTTCACCAAACAAAGCAGTGGCCATCATTGGTGTAGATGTAACTCAAGATCATGACCATTCTGCAAGTTGTGGATTGACTGAAGTCATCAGCTTTCCGATGAGAGAGGAGATTGTCAACCAATTACTTCTAAAATATGCTGGGATCATTCCCTTTAGAGGTTTGCCCCTCACACCTGAAAGTCCAGATGATGATGTTGCAGTGGCAAGAAAAGCAGCAGAGATCATTAGAGAATCAGAAGAACAAGGTATCCTTACCTACCATAAGGAGAACTACTCTCACAAAGACAGTGACGAAGTGGAGTCAACGTTTAACACCCTGGAGGATGTTGTCCCTCGTGCTATCCTCAGTTCAAGACTTGGCTCTGGATTATACACAGATTCTAACACTATCCAATTTGTTAGATCTACCTCCAGCCCTCTGAATCAAGACCATGGTATCACGAGGCAGTTGTCTCCTTTTGCTAACCCAGAGATGAGAAGATCATCATTAAATGGCAATGATGACACTAGAGAGACTATGAATGCACCTTATCAGGACTCCATGTTCAACAAGGAGCACACATCCTGGACAATAACACACAACCAAATTTCAGAAAATATTACTCAGAATGTTTTGCCCATTCCAACCAGCTACACTGATCACCTAAATGGCAACCAAGTCACTCAGATATTTCAAGGCCAAAACAACAACCCTGTCGTCTATCAACACAGCCGGCAAGCCACCACTTCAAATCAGTTACGGTTATCCTTGCACTTTCCGTCACCAAGCGTGCAAGAAACTAGAGCACAGCAAACAACCATACCAAGTCAAACAACCATACCAAGTCAAACAGCCATACCAAGTCAAACAACCATACCAAGTCAAACAACCATACCAAGTCAAACAACCATAGCAAGTCAAACAGCCATGCCAAGTCAAACAGCCATACCAAGTCAAACAAATATGCCAAGTCAAACGTTCATCCCAAGTCAAACAGTCATCCCAAGTCAAACAACCATCCTAAGCCAAGGAAATGCCCCCAGTCAAACCCAAGGTGTTTCAGAGGCTGCATCTTTGGTGTCCAATAAAATGAAGGTTCAATCATCAGTTGGAAGTTCAGCATATATGGTCAGTGGAACACCAGGAAGCAAAGATATGAAGATCACTATACTCCCTGATGACTTATCAAAACACAGCTCCAAGGAACGAATTAGGAGGGAAAGGATAAAGGAAAGCTGTGACAAATTGCGATTTCTACTTCCTAACATAACAGGAAAGAAGAGTGATATGGCATCAGTCCTGGAAATGACAGTTAAGTTTGTCAAGCTTGTTAATGAAAGAATTCCACCTCAAGTTATGCAAGAGATAGCAGATGCCCTTTCTGTGACTACCATGGGAGTGTGCAGAAAGAGAACTCAGAAGGACTTCAATGTGCATCCTTCAAAACAGAAACTAATGAGGGTTGTACATCCTCAAGTTCCTGTTCCATCACCATTGACATCTGGAGAACCTCAGGGGCATATTATCTACCCAACATTATTGAGCAATAATGGCCCTGTTTATCGCTCCCATGGACAACACTGTGGCTCCAGTCCTCACCAGTACAATCAATACCTTCAAGGAATCAGCTATAGTGGAACGTACAGCCCACAACCAAAGGACATACATGCTGGATATATTCACTCAAGTCATGCTAACCAAGAAATGACCATACCATCTATTATCACACACACAGCTACTAAGGAACCACAAATTTGTCATAACTACCAAACGATTCACTCTGACATGAACATATGTCCACATAGACAAATGTATGGTCCTCCACTGGCTATTAATACATCAGCTCATAGTGACATGCCGCAACAGTGGAGTTTCTTGAAATTGCCATCAATCAGTGCCATCTCTCCTTGCAGCAGTACTTACTTGAGTAGCAGCGAGGAACAAAATTCAAGGTCAAATAGCCCTTCCACAGATGCATCTCTGGATTCTCCAATGTGGGAAGAAGCCAAAGGTCCTTGTGCGATTTAA

Transcript

Actinostola_15048

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR039583	Family	Transcription factor-like 5/SOLH1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15402	TRANSCRIPTION FACTOR-LIKE 5 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0007283	Biological Process	spermatogenesis	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-