Gene detail

Detailed information of Actinostola_14265 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_14265	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	scaffold339_size388949	83665	97729	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_14265

ATGATGCCAGGGGGGACCCCTGGCTCAGCGGCCGGGCCTACCACAGGGAGCCCGAGCCATCAGAGAGATAACGCAGGAAGCCCAAATTTGGAAAATTTGGAAAATTTGGAAAAGCCAGGAAACTCAGGAAACCAAAGCACGAAGGACAAGAACTCAACCAGAGACACCAGAGACAACCCGACAGACTCCCCTTCAGATGCCAGAGACAACCTAACGCCATGGCGGCCACTCACAGTGAGCCTCCCTATGGCTGGACGTGACATTTTGCGACAGGACTACATACAGGGCCTGAAAGATTATGGCATACTCGAAAAAGATATCTACTGTATCCAACGAACAGCAACGAGAGTGATGGTCACTGTAAAAACCGAAGCAATAAGGAAAGATCTTATTGACTCTGGCCTAATACAGATTGCTGGACAACAGATGACCATACAAGACGCACAGAGCAGTCTCACCTTCGTAACAATTTTCGACGCTCCATACGAGCTACCAGACGACGCTATCAAGCGAATCCTCCGCCCATACGGACGGGTTAAAACCCAACGCAGACAAGTTCATCGAGGGACGACCATTGAAACAGGAATACGCACCATCCGTATGAACATCGACAAGCCCATACCCAGCTATATCCGGGTGGGCAATATGATACTAGGCATCAAATACGAAGGGCAAGAGGCAACTTGCAAGAAATGTGATAGCCCGGATCACAAGCAATGGCAATGCCATTTAATGCGCTGCTACAACTGTGGAGAAATGGGCCACATGGCCGTGGAGTGCAAAGAAAGATCGAGGTGCAGTATCTGCACCAGCAAGCAGCACTACGCCTACCACTGCCCTCATAACTGGCTATACCAGGACGATGATGACACTAGAACACAGGACGAGGAGGCCGAAAAACAACCCACAACTGACCACACTCAGGCAAACAACGTGGCGCCTACATCGAGCACCTTTACCCCACCGCCACAGCTACCTCAGCTACCACAGCCACAGCCGACTCCCCCACTGATGCCCGCACCCGATTTCTGGACAACGGCTAACAGCAAGCCCCTACATCCGCCCCAATCACGAAAAGGCTCTGGAAGACAACCAGCTAATTTAGGCAACACGCCACAAATACCCACAAGAAAGGCTACCCAGCCAGCCAAAATGACGGCGAAGACCTCGCTAGAGGATGATTTAAAACAGACTGCAGAGAAGAACACAAGCGACCAGGACAAAGGAACTACGAACGAACAGATGGAGACAGAATCGGTATGCTCCAAACGCAGCCGATCATCATCGCTCGGCACGTCATCGGACGGAGAACGCGATACCGACACATCACAAGAAAGAACTTTGGAGTCAGCTCCTCCGACCCCTGAAAAGAAAAAGAACGGGCCAGCGGGACCTAGCCTGGCGGCAAACAACTTAAGGAAAAAACACCGATCGAAGAAGAAAAGGACACGCAAAGGGATCGGGGAGGCCGGAAAGCGTGAGATGCTCATTGCAGACCTGGCCGAGCGAGGGGACGACTTTATTCTCCTTCAAGAGACTTACGTCGATCGCAGCGGCAAGGCAGATAAATTTAACAAGCAATGGGGATCTCAAGGCTACTGGTCCTTTGGGACAAACAAGTGTGCCGGGGTGGGAATTTTGACACGGGCAAACTCGAAATTTAAGGTTTTACAATTTCAACAGGACACAGCAGGAAGAGTCATGAGCTTGTTGGTCGCTAGAGACCAACAGGTTTTTAACCTCCTGAGCGTCTATGCACCCGCGGGTATAACCGCTCGAAAGGAATTTATCAGAGATCTGCATCAATACTTCTACACCGGGGTACCAGTAATAGTTGGAGGCGATTTTAACTGTATTGAAGCCGAAGTAGATAGATTTGGTCACTCCACCGATGCATGTAAGGCAGGGGGAGTAGAGCTGACAGCTCTCAAGTCCAATTTTGACCTCATAGACATTTGGAGGCACCAACATAAACGTGCAAAAGAATATACCTGGTGGAAGAAGGATTGTAGTGCAGGCTCTCGACTAGATAAATTCCTTGTCGATAAGCGGTTCAAAGAAGTAAGAAGCAGCGCGATCGAACCGTGTGTTTTCTCGGACCATGAATACATCTCTATTGTCATGCGGCTCGCAGTGACACCGCGCATGACCCATTTATGGAAGCTCAACGCATTGAATCTAGACGACCCTGAATACACACGAAGGATCGAGCAGGTTTTAGACCAAGGCATACAAAGGAAAACACACTCCCCTTCCCTACAAGAGTGGTGGGAGGACTTAAAACAAAACATACGGACTACTACACAGACGTACGACAAACAGAAGAGGAAACGTGACAAGGAAAACCAGGACAGAGTGACAAAAAACATAATTAAACTTAAACGAACATTAGACCCACAGAACCGAGAACGAGTACAACAACTTACTGACCTTGAAACGACACTACGGGAACTTAAAGTCCAGAAAATGGAAGGGGCGAAGATCCGAAGTCGGGTCCAATGGATCGAACAAGGGGAAAAGCCCACGAAATTCTTTTACAATCTAGAAAAACAACGAGCAAAAACAAACACAATTGACAGCGTACGAGACGACAATGACGAGGAGGTGACGGACTCAAACGCCATCAAAACCGTCGTGACAGACTTTTACACGAACCTTTACAAGAAAGACCTGATAGACATGATCGAACAAGACAGACTACTGACAAACATTACAAGGAAACTGGACAATACCGAATCAGAACAATGCGAGGGACCCTTCTCTATAGAGGAGGCGACAAGCGCTATCCAAGAAGCCAACAACGGGAAGTCCCCCGGGAAGGACGGGCTCCCGCCCGAGTTCTATAAACGATTCTGGAACAAACTCGGTACGGAACTAGTCGCAGTTTTGAACGAGGGGTATGAGAAAGGTCACCTCGCCCCGACACAACAAGAAAGTGTCATCCGACTACTGTACAAAAAAGACGACAGAACTTACTTAAAGAACTGGCGACCAATTTCATTTCTGAACGCAGACTATAAGATTGCTACGAAAATACTGACTAACCGACTGAAACGAGTACTAGACGTTTTAATTAACGAAGACCAGACATGCGCAGTACCGAACAGAGACATTAGTAACAACCTAAACCTGATAAGGGACGTACTGGACTACACGGAAAGAACCCAAGAACCCGGTATCCTATTGAGCCTAGACCAGGAAAAAGCTTTCGACCGGGTAGACCGATCACTGCTGCATAACGTGTTACGTCGATACGGATTCGGGCCATCTTTCACACGATGGGTCAGTACAATCTACGTCGGCGCTAGCGCACAGGTTATATGCAACGGAGAGTTGACCGAACGCATCCCACTAGAACGGGGCGTACGACAAGGCTGTCCCCTCTCCCCTGCACTATATGTGCTGTTGGCAGAGGTACTCGGCGAAGCCATTAGAAGCGACCCAAATATTACCGGGTTCTTGTTACCAGGGGCAAAGGGGAAAGAATTTCGCCTAGCACAATACGCTGACGATACGACCGTATACATTAAGACGGACAGATCCCTACAACAGGTACTACATGTAGTCCAACGCTACGAAAACGCTTCGGGAGCGCGCTTGAACAAAACTAAAACAGAAGCCATGTGGCTGGGGAAATGGTCTAGCAGAGAAGATACACCACACGGACTCAAATGGGTACAAAAAATGCGCATTTTGGGCATAGTATTCGGGCAAGGGGAGGTTGAGACGGACAATTGGGGTCCAAAGCTCGCCAAACTAGAGAAATGTCTCAATGTATGGCGGACTCGAGAACTCTCACTGATTGGCAAAGCGCTTATAATAAATACTGTGGGCGCCAGTCGCTTCTGGTACGCCGCTCGTGTGCTACCAGTGCCCAAATGGGTAGTCCTTCACTATGAAAAACTAGTATGGGCCTTCATCTGGAAGACCAAACTGCAACCAATAGCCAGGAGAACAATGATAGGCCCAGTCAAAGAAGGGGGAATAGGAATGCTTCAAGACCAGTTCAAGCTCAATAAAAAGCTATTACAGCATTGGTATGGAGTGACCGATGTTGGCGACATCACCACTCCACTGGGCACAGCTCTGCACCCTCAATTTCCTTCCGTTGAAGATTATGGCGGGGTGTTCTTCACTTCTCTACGTCCACCGCAAACATCGTGTGTTAATGCAGAAGTTCAAACCGACAAAGTGGACGCATATCCACCTATTATCATACATGCAGACCAACAAGTTCAATGCAATGAAGCAGAGCGCATTCTCGATGGCATCGATAGTGACGATGAAGACATAACGCCGCATTACAAGCCTGACGTAGTGCATAGTGAAAGCCAGACATATTCGAAAGTTATTGTTGTTGACGCTGGTATCGACCTTGAAAGAGCGACGTTTATTGAAGCGAAGGCTGATAAAGGGACTCAAACCATTGAAGTTTGTGAGCGGCTGGTAGTGCGGCTGAAGGATATATGCCGCTACCACAACGCAGGCAAACTGTTACATCAACCAATGCAGTCCGATGCTGAGATTCAACTCAATCCACGAAGCAGCTTGCCCTTAGAACCACAAATTATTGTTCTCTCTGGTCATGACGACAATTTCAGTAAGGACGAAAATGTGACCATGGCACAAGCATTCGTTGGTCAAGATCCTGACTTGGTAGTGTGCGAGAGAGATGAGCAAGATATCAATGATGAGTTTCAACCAAATCCACAAACCAAACCAGAAATTACTGTTATTTGTGGTCATAACGACCAGTTGAATGAGGACGAAAATGTGATCGTTGCACAAACATTCGTTGGTCAAGATCCTGACTTGGTAGTGTGCGAGAGACATGAGCAAGATATCAATGCTGAGTTTCAACCAAATCCACAAACCACCGCCACTACAAGCGCAAAGAGGAAGTATGTCTTGGTAGAGGTTGAGGACAAAGACGGTCCCGTTCCGAAGGATGCAAGAACAGAAGAACAGAACGAGGAGGAAAGCGATGACAATGGTTCTGATTGCGAAGATATCCCAAAGGGTCTTTGCCCCAGTACGTTGCAGTGCTACTCTACAGCACTTGAAGAATATGGAAACTTCATTTTGGCTGCTCGAAAATGGTCCAACGAACTGTCCGAAAAGGGAAGGGACGGACTGAATGCTCTTACCAAATGTCAGAAGAAGTGGCGGTACGCCCTCAAAAAAGACCGTCGAATCCAGAACAACAGACGATTTGTTGAGGATAAACACAACATTTTATCACTGGAGGACATCCATAAAGTTTTGGATTCACAGCATGCCAAAGATTGTGCGGCGAGGCTGAAGCACTACTATGATCTTATCAAAGACGAGAAGACGGCCTGCCCTACAGACCTTCGCAAGATGTGGGTCACCACAGTGTACAAAGATGGAACGCCAAAGGAGAGAAGGCAATTATCAACCAAGATGGGACACGGCGAGAGGACGGCTCAAATTTGGTACGATTTTACCGAGAAACAAGACGAGGCAACGGAGGCCTTCAAACTGATGGAAAACCATCTGGAAAGTGTAGGGGGGAAGAAGACCGACGAAGAGTCTCCTGTCAAGTCGAGCAAATTAACACCCAAGAAAAGGAACAGATGCTCATGGAACAAAGAGGAAGAATCAAGCGTAACTGTCACGTTCCGCGAGGAAATACGGTCTACAGACAAACTGAAGAAGGCCACAATATTGGCCAAGTTCAAGAAGGACCTTCCCAACATCTATGCGAAGGAAGACAGCTATAAGTGGCGTGAACGTTGCTTTGACAAA

Transcript

Actinostola_14265

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052343	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-