Gene detail

Detailed information of Actinostola_14238 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_14238	PROTEIN CBG26694	scaffold335_size391927	326157	330299	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_14238

ATGACCGACACCGAACCTTCCAGAGACGCGGCCAGCACAAGCAGCACCAACACCAATGTTGTTATTCACAGGAATCTCAACATAAAACCATTCGTAAAGCAAGCCGACTCCAAAGACACAGCAGTCCGCTGGGAACGATACAAGAAGGACCCAGGACGGAGACGATGTTTACACAGTTTTATCCACAAATTTGACAACCATTTCATGCCTAAAAAGAATAAGGACTTTGCACGATTCCAACTCAGCGAAATGAAGCAGCAAAGCAGAGAAAAACTGTCAGATTACTACGCCAAAATAAGAGACATCGCGAGGAAATGCGACTATGGCACTCACGAAGACGACGCAATTCGAGATCATCTGATTAGAACAATGCTAAACAACAAAATACGAAGCAAAGCAATCAGAGAGAACTGGAACTTGGATAGAATCTTAACCGAAACAGCGCTCGACGAACAGACATCAGGACAAGCCGGAGCAATTAAAGCAAGAAGCTCGATACCGAGCGCAGCTCAGAAAGAATCAAGAAAATTGCAGCTCGCAAGCCGAGAAACGCGAACCAAGGATCATGTTTGCGATGTGGGAGTTCCCAGAGACATCAGAGACATGAAACATGCCCTGCCATGGGTGCTACGTGTGATAACTGTGGGAAACTCAACCACTACGCTCGTGTATGTCTTGGAAAACCGCAACAACAAAACGACGGACGCCGAGAAAATCGTCAAAGAAATCAACGTCCCAGAAACGTTAACAGCAACAATCGGGACTACCAAAGAAACGAGACGAAACGTGATAACAACGGCACCAGCAATTCTACGCAAAGACAAAGAGCACGCGCTAAACACATCGAGAATCAAGGCGGCGATGACAGCTCAACTAGCAGTGACGACGAATGCTAGCTACATGCACCATCTACAAACCCATCACACAAGCCAAGACAAGGGCAATGGGAAAACCTGCACAGTACAAATAAACGGCACAGACGTCCTAATAGAACCTGACACTGGATCAGACGCTACTATAATGGACGAACAACAGCTTAAGATATTGCAAGAAAAAGCACCGGAAGTGAAACTGAAACCATCAAAGGTCAAGTTAAAAGCTCTCAAAGAAGATCTACCGGTAATTGGAGAAGCAGATGTAATTATCGAAAACCAAACACGAACTGTATACACAACCATCGTGATTATCAAAGGGAAAATCGACTCTCCAGCACTCCTTGGAAGAGAAACACTCGAAGAACTCGGGATGGTTTTAATTGACACAACCGGTGGACTCAAAAGCCCAAACAAAAGTATCAAGAATGTCAATCAACAAAAGCCTGATGACAACGACATCAAACTTGATGAAATACTTAACAGGTACAAATATAGATTTACTGGAATTGGAAAAGCCATGCGTGACGGTCAAGAAATCAAGATATCAGTACCGATGAAAGATAACGCAATTCCTATCGCTCAGAAACCGCGAAGAGTACCATATCTACTGACAGAACCACTAAAGAAACGAATTGAAGAGTTCGTGGAAAACGATATTACCGAACCAGTTCCAGAGCATGAAGCCATCACGTGGTGTTCACCCTTAGTTGTTCAACCAAAGCCAAAGAATCCGAAGGATATTCGAGCCTGTCTTGACCTCAGATTAGTAAACAAGTCAATGCTAAGAACAAGACAAGTCCAAGCACCAATCACAGAGGACTTTATCACAGAATTCAAAGGATGCAAAATATTCAGCAAATTGGATTTAAACCACGGTTATCATCAATTTGCACTGGATGAAGAGTCAAGACGAATAATGACATTCTCCACGCCCTGGGGAAATTACAGATACAATCGATTAGCGTTTGGAGGACTGAACAGCCAAGATCTGTTTGATGCAGAGATGGCGAAGGTTATTTCTGGAATCCCACGAGTACTCAACAACAGAGACGACGTCATGATCGGAGGACTGGACTGGAATGACCATAACACAAACCTGAGGATACTATTACAAAGAATCCAAGACCACAATCTCACTCTAAGAAAAGAGAAATACGAGTTCGGAAAGACCACACTTAACTTCCACGGACACCTGTTTACAGCTGATGGATTACAACCCAGCCCAGACAAAATCAAAGCGGTGAAAGAATGCAAACGACCAGGCACTAAAGAGGAACTTGTTTCATTCCTACAGATGTTAGCATATCTATCACGATACATTAACAACTTCTCAAGCAGATGTGAATCACTACGACGCCTGACCAGAGACAAAGCACAGTTCAACTGGACTACAGAGCAGCAAGCAGCATTTGAAGATCTGAAGAGCGCAATAACCTCAGCACCTGTTCTCATACCGTTCTACCCAGAAAGAGAGACACTGATCATATGTGACGGCAGCCCCACAGGACTCCTCGGAGGGGGACTCTTCCAAAAGACCCAACATGGATACCAGCCAGTCCACTACGTGAGCCGTACCCTGACAGAAACGGAGAGCAGATACTCACAAATAGAACGAGAGGCCCTATCAGTAGAATTTACAACATCAAGACTGCAAATGTACCTGCTAGGTGGAAAGCACTTCAAAATCGCCACAGATCACAAACCCTTGCTTCCCTTGTTCAACAACGCACAGGCAAAACTACCTCCAAGAATCGAAAGAATGGTAATGAAAATGCAGAATCTGGATTTCACTATGACGCACATCCCTGGGAAGGAAAATGCAACATATTATATGTCAAGACACCCTCTACCAGAGACAGGAAAGGACAGAACGGATAAACATGTTAAAGCAGTCACCCAAGCAGATCATGCGATCATACTTGACAACGTTGCAACTGCAACTGAGACCGACAAAGAACTGCAACACTTGAAACATGCCATGCGATCAGGAATCTGGGACAAGAAGGACCCAGTACTAAAGCCATACCTAGATATACAGGCAGAGATCTACGAAACGGAAAACGTCATCCTACGATTGGACAAGATCATCCCACCACAAGAACTACGAGAGAAGATTATACGAATAGCACACAACCAGGGACACCTGGGACTGTCAAAAACCAAAGAGATGATTCGCCACAAGTACTGGTGGCCAGAACCAGCTAAAATGACAGAACTACCAGCGAGACCATGGGCTACCATAGAAGTGGACTTCTGCATACCATTCCCAAACGGCGAATATGCACTTGTAGCCAGGACAACTTCATTTGAAAGCACCAGAAAGAAGCTGAAGAAGATGTTCTCCACACACGGTATTGCAGAGCGGCCCAAACAAGTTGAAGGATTCAACAAACTGGTCAACAAGATCAGTGCAATTGCAAGACAAGACAGCATCGATCCACACGAAGCGATCTATGACATGCTGCAGGCATACAGAAGCACCCCACACCCAGCAACAAAGACACCACCATACCAGCTACTGATGAACAGAGAGGTAAGGACAAAGTTGGACCATTTCCCAACCAAGAGACACGACAACGACAAGGAAGTTAGAGAAAATGATCTCACCTACAAGCAAAGATGCAAAGAATACCACGACAAACGACACAATGTAAAAACACACACAATGAAGAACGGAGATGCAGTGGTAGTGAAAAGAGAAAACAAGAGAAAGGGACAGACACCCTATGAGCCATACATCTACATTGTCATCCACACTAAAGGATCACAGATCACAGCAAAGAGGATTAAAGACGAGAGAACCATTTGTCGAGATGCATCTAAATTTAAACCCTTAAGGACGGTCAAGATACAGCAAGAAGAACCTGACATACCTACACGTCCAGCAGTACCTAACTGTATAGCAGAAGACAAGCCTCAAGAAGAACCGACACCAGCACAGATGAATGCTACAGCCGACACCCAACAA

Transcript

Actinostola_14238

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03732	Retrotrans_gag	Retrotransposon gag protein	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR005162	Domain	Retrotransposon gag domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-