Gene detail

Detailed information of Actinostola_14129 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_14129	KELCH DOMAIN-CONTAINING PROTEIN 3	scaffold32_size1013466	30062	44259	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_14129

ATGGGTCAAGACCTCTCTAAGCACACCAAAGTGTCTGGAAGCTATGATAGTCTGCAAATCAACAAACTCAATAGTCTTCAATATAACAAAACTACTTCAAAATTTACAGAAAGAGAATTCAAGAGCTTGGTCAAGTTATTCTATAATCTAGCAGCTTTGTCCCCACAACATAACTACATTAGTAAAACAACATTTGAACACTACTTCCCTTTGGGAGGAATATTAGCAAAGAGGTTATTTGTTGCTTTTGATACAGACAAAAATGGACTTATTGATCTGCAAGAATTCCTAGATGGTATGGCATTATGTCTTCAAGGTTCAATAGATGAGAAATACAAAATAGCTTTTGAAATGTTTGACCTCGATGGATCAAATGGAGTGTCACCTTGGGAATTACATGCGGTACTAAAATCTGTCTTGGGCACAACGTCAAGGTTGATTGAACAACGTCATAATCGACACGAGTTAACTGAAGTCGACCTGGATTACTTAGCTCATCGTATTGTACAGGACGCATTTAAACAGCAAGCAGCTGATCTAAACGGGGAATTCCACTGCGCACTAATGACAGAATACGAATTTCTCGCTCAGGACAACAAGATGACGTTAAAGGTGTTCAAGTCGTGGATGGAGAAACACCCGTTTGTTTTAGACTCCATTTTTGGACAAGCATGTTTGAAGGACAAAAATTTACAGTATTCACGTTTTGGAAATGAAGAGCGTCTGGGTGTCCCTGCAGAAAACGGCTTGTCTTCAGTGAAGAAGCAAACGTGGGTAGATTGTGCATCTGAAGATGAAATATCCGCTAAAACTAGTGAAAACACGTGGCTTCCTATAGAAGAACAGGGCGACAATCGACCTTCATATCTCCAGGAACACACAATGTTACCTTATAAAGGCCCTGTAAACCGTCGTGGTCACACGGCCGTCATATCAGGCGATGTAATGTATGTTTTTGGTGGGTATATCGACCTCAGAGGAGCTTCAAGAGAGCTATGGAAATATGAATTTTCTACAAACACTTGGACGAGAGAAAAGAGTCAATCGCGTGAGTGGCCGAGCCCGAGGTATTCCCATTCAGCGGCTGTATTCGACAAAAGTATGGTAATATTTGGCGGATTGGAAGAAATGCAGTGTAAAAATGATATGTGGCTGTGGAATATGGCGTCCTGTAAATGGAACAAAATAAAAGGAAAAAACTCCCCACCAGCACTGTTTGGTCATTCTGCTGCCAAGGTTGGTGATGGCATGTTAGTGTTTGGTGGAGAATCGACTGACGGGACTCTATTCAATACTTTGTGGAGATTTAACTTTGACGCACGAGCCTGGAGCACCGTAACACCAAAAGGCATGATATCACCGCCAGCACGAAGCTACCACTCTCTCGTCCGGATTCCTAATTTCCTTTTCACATCACGGCGACCAACTTCTTCACATTCGGCCCCACCTTGCACCCCGGGGTACGATCGCGAACTACCGAGACTAGAGGAAGAAAACGAGACCTCCGACGTGCGAAATCCAGCAAGGCTGAGTTCCGTGGTGTCCATGGGATCACTGGACTCGACGGCTTTGTTATCGCAAAATGAGGATGAAGTAATGAAGATTAAACTTAATCCCCTGGGTTCGTTAGACTCGCTAATTACGAACAAAGTCTTACGTGAAACTGAGAATATGTCAATGACAAATCATGAAAGAACTTGTTTTAGCGAAGAGACTTTGGTGAATATTAGTGCAGTGGAAAGCAACCAACACAAGATAGCTGCTAAACCAGCTGCTAAACCAGCTGCAAACTCAATTGGACGTTTACAACCCACTTCCGGTAGCCAGCGCGTGGCCGCTCTACGCCTGCAACTAAAACCACAGAGTTCCCACTGTTTGTCACCACTGAGTAAGGTACCTTTTCGCGGTCACCCTGTCAGTTACCCTGACGATGTCCTGCGGTCAGCGGTTGTTAATTTAATGGTCCTTGGTGGGACGTCTAAGAGAGGAATAGAAAGCGTCGACCGATGGATCGACATGTGGAAATGTCAAATTGATCCA

Transcript

Actinostola_14129

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202	EF-hand_5	EF hand	Domain	Interproscan
PF13415	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR052637	Family	Cullin-RING ligase complex substrate-recognition protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46461	KELCH DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-