Gene detail

Detailed information of Actinostola_12882 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_12882	VACUOLAR SORTING PROTEIN 35	scaffold25_size1091033	803951	818699	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_12882

ATGGCACCACCTCAGGCGCCATCCACTGAAGACCAGGAAAAGCTCCTCGATGAGGCAATTCAAGTAGTGAAGTCACAGTCGTTCCAGATGAAACGATGTCTGGACAAAGGCAAGCTCATGGACGGATTGAAACATGCGTCAAATATGCTGAGTGAACTAAGGACATCGTTGCTGTCACCTAAAAGTTACTACGAACTCTATATGGCTGTATCTGATGAGCTGCGCCATCTTGAACTTCATCTTCTCGATGAATTCCAGAAAGGAAGGAAGGTTTCAGACTTGTATGAACTTGTGCAGTATGCTGGCAACATTGTTCCTAGATTTGATGAATCAGAACCACACACTGGAACCATCAAAGACTCTATAAATTTCATCCTTCTTAATTTTTCTGAAATGAACAAACTGTGGGTGCGTATTCAGCATCAGGGTCATTCAAGACAGAAGACTCAGCGAGAACGTGAAAGACAAGAACTTAGGATTCTTGTTGGCACAAATCTTGTGAGATTGAGTCAGCTTGATGGAGTTACTGCTGATATCTATAAGAAGCTTGTTTTACCTGGAATTATTGAACAAACAGTTAACTGTAAAGATGCCATTGCTCAGGAGTATCTCATGGAGTGTATTATTCAGGTGTTCCCTGATGAATATCATCTTCAAACATTGACAGCCTTCCTCTCAAGCTCTGTGGAAATGCACCCTAATGTCAATATCAAGAACATTATTATTAGTCTTATTGATCGGTTAGCGTTATTTGCCAACCGTAGTGATGGTGGTATTCCAGCTGATATCAGACTCTTTGAGGTCATGTCAGAACAAGTATCATCTGTCATTCAGGTTCGTGAGGAAATGCCGACAGAAGACAAAGTTGCACTCCAAGTCTCACTCATCAACCTTGCACTGAAATGTTACCCTGACAGAGTTGATTATGTAGACAAAGTATTGCAGTTCACATCAGAAGTGTTCAGTAAACTTGAATTAGGACACATTGACAAGAACAACCCAGTGTCCAAGGAATTGACAAAGCTACTCAAGAACCCAATAGATTGTTATAACAACGTCCTTAAACTACTGGAACTCAAGTTTTTTATTCCAATGTTCAATTACTTCGACTACGCCACCAGAAAGGAAATGTCATTATATGTCATTACTAACGCTGTTGATAGTGAAGTGACAATTCCAACACAAGAACAGATTGATACGCTTCTTACTCTGGTATCGACATTAGTGACAGATCAAGAAGACCAACCTAGTGAACCAGATGACCCTGAAGATTTTGCAGAAGAACAGAATTTGATGGGCAAATTTATCACATTGATGAGGTCTGACAGTCCTGATCAACAATACTTAATTCTGAACACTGCCAGGAAACACTTTGGCAGTGGAGGAGAAAAAAGGATCAAGTTTACCCTACCCCCCATAGTATTTAGTGCGTACAAGTTGGCCTTCCAGTATGCTAGTGTCAAAGAAGAGGATGACAAATGGGACAAAAAGTGTCAAAAGATTTTCCAGTTTTGTCATCAAACAATAACTGCTTTGGCCAAGGCAGAATATTCTGAGTTGCCACTGAGACTTTTCCTGCAAGGAGCAATGTCTGCTGGGAAAGTCGGGTTTTCAAACTCAGAAACAGTTGCTTATGAATTCATGAGTCAGGCCTTCTCCATATACGAAGATGAAATTAGTGACTCTAAGGCTCAACTAGCTGCCATTACTCTCATCATTTGTACGTTTGAACAAATGAGTTGTTTTGGAGAAGAAAATCACGAGCCACTGCGCACCCAGTGTGCATTAGCTGCGTCCAAGCTGCTCAAGAAACCCGACCAGTGTCGAGCTGTTGGTGTGTGTTCACATTTGTTTTGGTCAGGAAAAAGCAAAGATGTTGAGGGTGGAGAGTGCCGTGATGGTAAACGTATGATGGAATGTCTCAAAAAAGCTGTCCGCATCGCTAATCAATGTATGGACTCCACAGTCCAAGTACAACTATTCATTGAGATCTTAAACCGATATCTGTACTACTACGAGAAGAACGCTGACTCGGTGAGTAGTCGTTGCGCAGGCATAAGAACTTGTGTG

Transcript

Actinostola_12882

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03635	Vps35	Vacuolar protein sorting-associated protein 35	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005378	Family	Vacuolar protein sorting-associated protein 35	Interproscan
IPR042491	Homologous_superfamily	Vacuolar protein sorting-associated protein 35, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11099	VACUOLAR SORTING PROTEIN 35	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005770	Cellular Component	late endosome	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0030904	Cellular Component	retromer complex	Interproscan
GO:0030906	Cellular Component	retromer, cargo-selective complex	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-