Gene detail

Detailed information of Actinostola_12739 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_12739	COATOMER SUBUNIT BETA	scaffold24_size1095642	627362	653819	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_12739

ATGACTACTCTTGCTGAACAGCCATGCTATACTCTGATAAATATTTTAAGCGACATAGAACCTCCATCGGAGCAGAAACTGAAGGAAGATATCGAAAAAGGTGATATCAAGGTCAAAATAGATACTTTAAAGAAAGTTATTCAGCTTATACTGAATGGAGAAAAGATGCCTTCACTGTTAATGACAGTCATCAAGTTCCTAATGCCGCTGCAAGACCACACCATCAAAAAGCTCTTGCTGATTTTCTGGGAAATCATCCCTAAAACAGGTTCAGATGGAAAACTACTTCATGAAATGATTCTGGTTTGTGATGCCTACAGGAAGGATCTTCAGCATCCAAATGAATTTATCAGAGGATCAACATTGAGATTCTTGTGTAAATTGAAGCAACCAGAGTTGATTGAGCCACTTATGCCCGCCATTAGGACGTGTCTTGAACATAGACATTCCTATGTGAGACGTAATGCAGTCATGGCCATCTATACCATTTACAATAAAGGAAAAGAGTATGAACCAGGGACACTTCAAACTTACCGGAACGGCCTCAGGAGATATTTTTTGGAGCGTCCTTGCCCACCAGCCATCGACAACTTCGACCTTGACAAGACTGGCAGCGCTGAGTTTGAGGAAGTTGCAACTATGTTGTCCTTGAAGAAGAAAGATCTGAAGAAGAAAGGGCTAGGCAACAAACCCAACGCAGCTGATCCAGTAGAAGCAGAAGACTTAGAGAAGATGTGGTCCAGTGGTGCTGTTGGTCTTCAAAATCCTAGAAGTCTGATCAGACTAGTTTGGTGGAACAACGTGACGCATCTGGGTATGCGAGCATGCAAGGAGCAGCACGACTGCCAACTTGAAGATTTTGTAGTTCGAGACCAGTATATTGAGTACACAGAGAGACAGACAAAGAATCGCCAGGGTGATGAAGGAAAAGCCAAGCGGGCTAGGAAATATAACAACAAGCTTTGGAAGACAGACGGTGGTGAACGCGATCCGTACCGAGCCTTTATGGAGTACGTGAGCCATAGACCAAAGGGCGACGATGTGCCAAACAACTTCTACTTGACGCCAATAGACAACACAACATCCGATGTTTGGTACAAGAGCATTCCTATTGGTGTCAATACCCTCAGTAAAATGATGAAGCAAATTGCTGATAAAGCAGGCTTGAAGGGAAAGTTCACTAACTCCAGTGGACGCAAGACAACAGTCCAACTTTTACGAGACGAATTCCATCCCTTGGAGATTTCAGAGCTGACTGGCCACGCCAATCCTGAAAATTTTGAGTTTCTGATTCCTGATGCCCCTGAACTTGTTCATACATTCTTGGAGCAGGAACAGGACGCTTCATGCAAGAGAAATGCCTTTATGATGCTAATCCATGTTGACCAGGAACGAGCCTTGGAGTATCTGAGCACATGTATTGATCAAGTAAATACTTTTGGTGATATTCTACAACTGGTCATTGTTGAACTCATTTACAAGGTATGTCATGCCAACCCAGCAGAGCGTTCAAGGTTTATCCGATGTATTTACAACTTGCTGAACTCATCATCCCCTGCAGTACGATATGAAGCAGCTGGTACACTGGTAACATTGTCATCAGCTCCTACTGCCGTCAAGTCTGCAGCATCTTGCTACATTGAGTTGATTGTCAAAGAGAGTGACAACAATGTAAAACTGATTGTTCTTGATCGCTTGATCAAACTCAAAGAAATTCCAGCTCACGAGAAAGTCTTACAGGAACTTGTGATGGATATTCTTCGTGTGCTGGGTTCTCCTGATCCTGAAGTGAGAAAGAAGACTCTTCAACTTGTTCTGGATCTTGTAACGTCTAGAAACATCCATGAAGTTGTTGCAGTCTTGAAGAAGGAAGTGACAAAGACTCATTTTGAGAGTGAACATGCTGACATTGGTAGTTACAGACAGATGCTTGTGCGTACCCTGCATACCTGTAGTGTTAAGTTCCCTGATGTAGCCAACTCCATTGTGCCATTGTTGATGGAATTCCTTGGTGACACCAATGAACAAGCAGCATTTGATGTCTTAGTGTTTGTCCGTGAGGCAATCCAGAGATTTGAGGTGCTGAAACCAGTCATCATGGAGAAACTACTGGAGAATGTACACATGATAAAGAGTGTCAAGATTCATCGCCATGCTTTGTGGATCCTTGGTGAATATGCAACCATTAAGGCTGACATCATGTGTGTGATAGATGAGATAAAGAAAGGATTAGGTGACATGCCGATAGTGGATGATGAGATGAGAAAGGCAGCAGGAGATATACCTGAAGCTAGTGAGGAGGCCCCAGCTGCAGGTGCTGGTCAAAGACTGGTTACTGCAGATGGTACGTACGCTACTCAAAGTGCATTCAGTCAGCCTGGAGCAGCTGCTGGCCTGGCCAAGAGTGAAGAAAAGAGACCACCTCTTCGTCAGTACTTGTTAGATGGGGAGTTCTTTGTTGGAGCTGCAATTGCTGGCATTCTTTCTAAAATTGCCTTGCGCTTCCTGGAACTGGAGACTGATGACAGGAAGAAAAATACCTTCTGTGCCAACTGCATGCTTATCATGTCTAGTATTCTACATCTTGGAAAGTCTGGGCTGCCAAAGAAGGCCATAACTGATGATGATGTAGACCGTATATCCATGTGTGTGCGTGCAGTAGCTGAGCGCACTCCTCTTATGCAGAAGATCTTCACGTCAGAGTGCCGTCAGTCCTTGTCAGCTATGCTCGATGCCAACAAGAAAATGGAGGATGATCAAAAGGACAAGGCTCATGCAGAGAAGGTTATTTCCATCCAGGCTGATGATCCTATCTCATTCATGGCATTATTGTCCAAGTCAGAGAATGGAATCACAGAGGACCAGTTTGCAGCAAGTTTGTCCCAAGCTGTTGGAAACACAAACTTAAAGAATGAGGAAGAACTGCAGAGTTCTAAACTCAACAAGGTAGCCCAGTTGACAGGTTTCTCTGACCCAGTCTATGCCGAGGCTTATGTCAATGTCAATCAATATGACATTGTACTGGATGTCCTGATTGTCAATCAAACCACTGACACACTTCAGAATGTCACTCTAGAACTGGCTACATTGGGTGACCTAAAGCTTGTTGAGAAGCCTCAGCCAATACTACTAGGACCTAATGATTTCTCAAATATCAAGGCAAATGTGAAGGTGTCGTCAACTGAAAATGGCATCATCTTTGGAAACATTGTTTATGATGTGTCTGGTGGTGGTGGTGACCGTAACTGTGTTGTACTCAATGACATACATATCGACATTATGGACTACATCCTACCAGCCTCCTGCACCGACTCTGAGTTCAGACAAATGTGGGCTGAGTTTGAATGGGAAAATAAGGTGACAGTCAATACGAACATTAGTGACTTGAAGGGCTACCTTAGTCACCTGATTAAATGTACCAACATGCAATGTCTAACACCTGAGAAGGCTCTTGAAGGATCGTGTGGGTTCATGGCTGCTAACCTGTATGCACGTAGTATATTCGGAGAGGATGCATTAGCTAATGTTAGCATAGAGAAGCTACAAGACCAAGCTGGTGTGACAGGACATGTTCGTATCAGAGCCAAGAGTCAGGGAATGGCTCTAAGTCTTGGTGACAAGATCAATCTTTCTCAAAAGAGCAGTTCTTAG

Transcript

Actinostola_12739

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF07718	Coatamer_beta_C	Coatomer beta C-terminal region	Domain	Interproscan
PF12012	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan
PF14806	Coatomer_b_Cpla	Coatomer beta subunit appendage platform	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR011710	Domain	Coatomer beta subunit, C-terminal	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR016460	Family	Coatomer beta subunit (COPB1)	Interproscan
IPR021893	Domain	Domain of unknown function DUF3504	Interproscan
IPR029446	Domain	Coatomer beta subunit, appendage platform domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10635	COATOMER SUBUNIT BETA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005198	Molecular Function	structural molecule activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan
GO:0030126	Cellular Component	COPI vesicle coat	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-