Gene detail

Detailed information of Actinostola_11949 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_11949	SMAD	scaffold20_size1160370	669655	684891	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_11949

ATGGAGAAGGCTATGGCGCCATCTACGAGCCAGAAGAGAGCGCCATCCTCTTCTGATGCGAATTTGAGTATCGTACTGAGTTTGATGTGCCATACAACATGCCACAGACAAGGGGGTGAACCGGAGAAATTTGCCAAGAGAGCTATAGAGTCTTTAGTAAAAAAACTTCGAAAAAAGACAGACGAGTTAGAATCTTTAATCACAACAATCACAACAAATGGAGCTCAGCCTTCAAAGTGCGTTACGATACAGAGAACGTTAGATGGACGACTACAAGTCTGTGAACGAAAAGGCTTTCCTCATGTTATTTACGCGAGGCTATGGCGCTGGCCCGATATTCAGAAAATGGAGATGAAACATTTGGACTTTTGCCGATATGGCTATGACTTGAAATACGAGAGTGTGTGTGTTAATCCGTACCACTACGAAAGGATTCGTAGCCCAGCCGGTGAGTTGTATCTCCCTTCATCAATATTCCCTTATTTTACCCTGATTTTGAATTCATTTGAGGGGTATCGAATGGTCAAGGTGAGACTTTGCGAGACTCTGAGACATATTTACGGCTCGGTTTTACACATCAGCTCTCGACTTCTCCCAAACTTCCTCTCGTGTTATATTAGGCCGATATCACATGGAAAACGTTTTATATTTGTTAAATTTAGTGCTAAATACTGGTTCAGGAACTCGCTTTATGTCACTTCAAGGCCCAATGCTTCACCACCAGATGAGGATTCTCAGAGGCAACTGCTGACACCCCCAATACCTCAGAAGTCTGACATGTCACCTGAAACTCACAGCCCAAGAAATGTACAGCCATATCCTGTGTTGCCAGGAACAAGTCCTGTCTCACAATACCATGGACAAATGCTTTTTAAAAGGAAAAGAGAGAGGATGGACTCTACAAGTTCTTCAGCTACGGGATCCAGTGAAGAGGACCAGGAGATAGATGTAGAATCAAGTTGTGATTCCTGTTCTTATGATTCTAAAAGAATAAAGTTTTCTTCCAATACGATGTACTGCCATGAAGATGAAGATAGCACAGAAGGGGACATAGCCAGTCATCAGGAAACCCCATCCACACCAAATGGTATAAATAAAGTTGGTTTTCAAACAGAACCTGAGTTGATCAATTTGTGTGATACAGCTGGACGTGTCTGGGTTCATGAAAAGTGTGCTGCTTGGACATTGTCATCTTTATCATACAAATCAGTGTCACGATTGACGGTAGATATCACCAACCAAATTCTTACAAAAAAATGTCATCATTGTGATGGTTATGGCGCAAGCATTAGTTGTGTAGCTGAAAGTTGTCAGAAATTATATCATTATCCATGTGCAATAGTAGCAGGAACTTACCAAGATGTGAAAACAATGAAACTTCACTGTCCAGAACATTCTTCTATGGCAGCTTCATCAGCTTATTGTGAAAAGTGTAAATGTGGTACAAGTGATCCATCTCAATTGCTGTTATGTTCACGGTGTGGTTACCATTATCATGGCGAATGTTGTTCTCCCCCGGTACATCCTAATGAACTGATCAGAGCTGGGTGGGAATGTTTGATGTGTAAGACATGTCAAGCATGCAGGCAACCGTCACCTCGTGAAAGACTTCTGGTGTGCAGAGTATGTGATAAAGCCTACCATCTATTTTGTTCTCAACCAGTAAGCTCAGTCAAAGACAAACTTCACTGGAAATGTGAGCGATGTCGAAAGTGTAGACAGTGTGAATCCACAAAGGCTAGTCAGTGGTTTATTGATTATACACTTTGTTGTGGATGTTACTATCAGATGCACAAGTCCAATGGATGCCCCCTTTGTCACCACAGTAATGGACATAGGAAAGCAGTTCAGTGTGATTCCTGCAGCAGATGGGTTCATGCTTCATGTGATAATATCACTCATGAAATCTATGAAAGACTACAAGTGGATCCCAGAATTATATATGTGTGCAAAATATGCCGTGACGAAGTTGAACATATTAAAAAAGATCATCAAAAAGAGATAAAGACAGACCCCACAGAGTTAGAAGCAATATCCGATGCGACATCTACGATGATCGACCTTTGCCAATACAGATCCATGCCTCCTTTAACGAGTTACTTCAAGTCAGCGAAACCCAACACACAGACAACGTATTCATTACTCACCAGTCAACCACTACAGTGGTCGCGGCTACGCATGACTTACTCATTTGAATATTTTATCATGAAACAACATGGCAAGGTGCTGTTATAA

Transcript

Actinostola_11949

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	MH1
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628	PHD	PHD-finger	Domain	Interproscan
PF03165	MH1	MH1 domain	Domain	Interproscan
PF13832	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR003619	Domain	MAD homology 1, Dwarfin-type	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013019	Domain	MAD homology, MH1	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013790	Family	Dwarfin	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR034732	Domain	Extended PHD (ePHD) domain	Interproscan
IPR036578	Homologous_superfamily	SMAD MH1 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13703	SMAD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007179	Biological Process	transforming growth factor beta receptor signaling pathway	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0030509	Biological Process	BMP signaling pathway	Interproscan
GO:0060395	Biological Process	SMAD protein signal transduction	Interproscan
GO:0070411	Molecular Function	I-SMAD binding	Interproscan
GO:0071144	Cellular Component	heteromeric SMAD protein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-