Gene detail

Detailed information of Actinostola_11877 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_11877	SODIUM/HYDROGEN EXCHANGER	scaffold206_size491507	165536	178812	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_11877

GTGGTCCGGCAAGTGATGAAAAAATGGCCGATACCATACACTGTCGTGCTCATTATACTAGGAGCTTGTTTTGGAGCTGTGTCTGGAACCTTCCCTTCTGTTAAAGTATACTCTTCTATGGCCAGTAATGACCCTCATCTCATCCTAACAACATTCCTTCCAGTTCTTCTCTTTGAGTCAGCCTTTGCAATGGATGTCCATATATTCTACAAACTGTTTTGGCAAATTATTATCCTGGCAGGGTTTGGTTTGGCCATCGCTACCTTTCTATCTGGTGTCATGGCCATCATGGTGTTTACATACAACTGGACTTGGTTTCAAGCGCTCATGTTTGGCGCAATTATAAGCGCCACAGATCCTGTAGCAGTTGTTGCGTTACTAAACGATTTGGGTGCATCCAAACAACTCGGTACCATCATCGAGGGTGAATCATTGCTGAACGATGGAATGGCTATCGTCTTGTACAAGATTTTCTTCAACCTTTCTTTTTCGTCAATGACAGTAGAGATCACCATTACACTGGCGTCCACATATCTCACCTTCTACATTGGTGAAGAAGTGCTAGGTATCTCTGGTGTACTGGCAGTCGTAATGCTTGGGATAGAGATCAACTCACAAAAGTCTAGTATTAGTCCTGAAGTAGAAGTCTTTTTACACAGGTTCTGGCAGATGCTAGCTTACCTTGCCAACACCCTTATATTTACAATGGTTGGAGTAGTGATCATGGAGAAATCACTCAGCAGTTTAGAAACGCAAGATCTATTCCTCATAATTGTAGACTACCTTGGTATAACTGTCATTAGGAGTTTGGTGATAGCGTTTTTTTCACCAGTACTCATGCACATAGGCTATGGTTTTACGTGGCAGACTGCTGTTGTAGTTTCGTGGGGTGGGCTGCGTGGTGCGGTAGGTCTAGCTCTGGCTTTACAAGTCTACATCGAGCACGCTGAAGTAGGAAACAAGATTCTGGTCCACACTGCAGGCATCTGTTTGATCACGTTACTGGTGAACGCTACAACTATGGAGAAACTGCTAGAGGTGATGGGCATGAGTGAAATCTCTGACTCCAAAAAGATTTCTATGACTAACGGTGTACGAAGAATCAAAGAAAGCAATGCCAGTACCCTGACCATGCTGAAGGCTGACCGTTTCTTAGCTGATGCTGACTGGCAACTGGCGCAAAAGTTTTGTGAACTTAGGAATCCTTACGTAGAGATGGACAGTGAGGGAGAGTACGACGACAGCGAGACAGCGTTGCTAGGGCGTCACAGCACGTGTCCTAAGTGTGAAGCAAGCGTACCTAACGAACCTTCTCCTAAAGAGTTTGCGGAAATGGCTGAAGATGGACGCATTCGTATGATCAAAGCACAAAAGGTCAGCTACTGGAAACAGTTTGAACACGGCATGCTTTCCAGCGAGGCAGTGCAATCGTTAAGCAACCTGGCGGACATCGTCTCAGACATACCAAACAGACGATTTGAGTCCATTCTGGAGAGTACCAACATATCTTCAAAAACTGGCAAGTTTATCATTATATTTTTGTTTACAATAGCGTGCATTGTCAAACTCTGTAAATATCATTACTATAAGTCAATTCTCAATAGACACAAACTGGAATCAGTGAGCCAAACTAAGGACTATGAGCTCGATCGTTCACCCGACAATCGAATCCAGTACTTCATGTACAAGGTTGCCATGCATATGAGCTTTGATGCCGTGATGAATGTACTCATTCTATTGAATTTGATTCCAATCATCTTTGAGCTGACAGCTCCAGACGATGCGCCGTATCTTGATATACTGAGGATTGTAAATTATGTCTACTGTACCATCTACGTTATGGAGGCATTATGGAAGATTTGTGCGTTTCGACTTCATTACTTCAAAGACTACTGGAATCTGTTGGACCTTTTTATCGTGATATTATCGCTTATTGACATCGTAATCGACAGAGTAACGGACAACGCTACCGGCAGCTTTTCTCCAGCCGTACTTAAGTTGTTGTCATTAATTATTATCATAATCACAAGCACCAATACTATCATCATCATCACCACCATCATCAATTATCATCACCATCATCATCATCACCACAATCATCATAATCATCATCATCATCACCATCATCATCATCACCACCATCATCACCACCATCATATCATCATCACCATCATCACCATCACCATCAATATTATCACCATCATCATCATCATAATAATAATCATCATCAACACCATCATCATTATCAACACCATCACCACCACTGTCATCATCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCATCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCATCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCATCATCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCATCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCGTTCTCAGTATAATTATCACAATCTTCACCATCATCATTGTCAACACCATCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCATCACCACCACTGTCATTGTCAACACCATCACCACCACTGTCATCATCACCACCACTGTCATTGTCAACACCATCATCATTGTCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCATCACCACCACTGTCATTGTCAACACCATCATCATTGTCAACACCATCAACACCATCATCATTGTCAACACCATCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCATCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCGTTCTCAGTATAATTATCACAATCTTCACCATCATCATTGTCAACACCATCACCACCACTGTCATTGTCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCATCAACACCATCATCATTGTCAACACCATCACCACCACTGTCATCCCGTTACTTCCCAAACTCATCAACAGCGTGGACAACTTTATCAACAAGAAGCTTAGCTTTGGCTACGATGTGGGGAAAGGATACATTGTTGCCGAGGAAGAAGTCAACAAACTTATTGAACACATGGTAGTAGACAAGAGAATTACACGTGATTTGAAGGTTCGCTCTGAACAGAACAGACTAGATGTGGTAAAGAGTCTAGGTATGCTCCAACGTGAACATCCGGGGATTGCAATATCCGTTAAGACCCGACAGGCAATTAGAACGGTGCTGAATAATGCACGGGATGTCACGAACGAACTTCGAGGAGGTGGATTACTGGACGAGGCGGAGTATAAGAAACTAGAATCGATCATCGAGACGAAAATGAAGAAACAGTTGAGCGCACCGGCCTACATTCCACCCCAGTCTCCCGAGTCTCTACTGCGTGGCGTGGTATGGCTGGAGGGAATGGACTCCGAGGTGATTGACGCGATCACAGCCATGGCAGAGATGAGATTGTTCGACTACGGGGAAACTATATCCAGGCAGGGAGACGATGTGGAAGGTATTTACCTTATAATCAGTGGAATGGTGAAGATGATAGGTGTGTCTGTAGCGAAGTGGAAAGACAAGTCAGGATACCAAGAAGTCGGTGACATGATCGTCACAACGGATTACATGACTGCTGGTAACAAAATCGGAGAATTCAGTTTGCTGACAGGTTCGCCACGAACTTCATCTTGTATCTGCGAGACATCTGTACAGACGTATTTCCTCCCTAAAGAGGAGATGAGCAAGGTATTGGAGGAAAACCCAGACCTTGCTAACAGACTATGGCGAGTCTGTGGTGTACGTATCGCCGTCCCTCTACTTATGGACATGCTAGCGTACCATAACTGGACCAAAGACAAGATCAGACTCATGTGTGAGCGTTCTTATCTCATGAAGATCCCTCGAACCACTACTACCTGCGCAGTTTTCAAAATGACGTCTATGATGCAAGAAGCACTGCTCATCCAGGGCCAGGTCACTTGTTCTGAAACCAGAGAGTCCTACGAAGGACCGGTGATTCTACCGAAGGTTTACCGAAACTATAAACTACATTACGACAAGGAGCCGAAGATTCTCATAATAGTTCGTGTGAACGAGAATCCCATCTCGGAAGACGTCGGTGATACACCCTCTGCACTGGATCTCCTTGGTGAGTTTCATGTGTTTTTATTGAGTATCAGCAGAAGTAGAACAATTCTTAGAACCCGAGCCCGAACCCGAAGTCGCAGCTTACTGGGTGACACTATAAGCGAGCATGATGTTCACCCCTATGGCACGAACAAACTCCAGAACACAGCTCCTAGCGTATTTGAAAGCGGTCGACGACTAGAACCCTTACGAGAGACACAAGGAAGACAGATTACAGTTTTGACGGCCTCGGAGTCGGATGATCTCGTTCACGTCGACAAATCTAACATTGATACTTAA

Transcript

Actinostola_11877

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF00999	Na_H_Exchanger	Sodium/hydrogen exchanger family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR006153	Domain	Cation/H+ exchanger	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR018422	Family	Cation/H+ exchanger, CPA1 family	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR027359	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10110	SODIUM/HYDROGEN EXCHANGER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0006812	Biological Process	monoatomic cation transport	Interproscan
GO:0015297	Molecular Function	antiporter activity	Interproscan
GO:0015385	Molecular Function	sodium:proton antiporter activity	Interproscan
GO:0015386	Molecular Function	potassium:proton antiporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0051453	Biological Process	regulation of intracellular pH	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0071805	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098719	Biological Process	sodium ion import across plasma membrane	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-